SGD News

New Papers - August 26, 2008

During the past week, 77 new papers have been added to SGD.

New Summary Paragraphs - August 26, 2008

Summary Paragraphs summarize published biological information for a gene/feature, and are designed to familiarize both yeast and non-yeast researchers with the general facts and important subtleties regarding a locus. During the past week, new summary paragraphs have been added to their respective Locus Summary pages for the following features:

List of Summary Paragraphs Added During the Past Week
ADH1/YOL086C	ADH2/YMR303C	ADH3/YMR083W	ADH5/YBR145W	ADH6/YMR318C
ADH7/YCR105W	AST1/YBL069W	AST2/YER101C	BDH1/YAL060W	BDH2/YAL061W
ETR1/YBR026C	PEX10/YDR265W	SFA1/YDL168W	SOR1/YJR159W	SOR2/YDL246C
XYL2/YLR070C	YIM1/YMR152W	ZTA1/YBR046C	YCR102C	YLR460C
YML131W	YNL134C

GO Annotation Information - August 26, 2008

During the past week, the GO annotations have been updated for the following features:

List of Features with GO Annotations Updated During the Past Week
ACM1/YPL267W	AHP1/YLR109W	ALG12/YNR030W	ALG13/YGL047W	APE2/YKL157W
ATP1/YBL099W	ATP15/YPL271W	ATP16/YDL004W	ATP2/YJR121W	ATP23/YNR020C
ATP3/YBR039W	ATP4/YPL078C	ATP5/YDR298C	ATP6/Q0085	ATP7/YKL016C
ATS1/YAL020C	BRX1/YOL077C	CAB1/YDR531W	CGR1/YGL029W	CHD1/YER164W
CIA1/YDR267C	CIC1/YHR052W	CPS1/YJL172W	DML1/YMR211W	DOT5/YIL010W
DUG1/YFR044C	DUG2/YBR281C	DUG3/YNL191W	EBP2/YKL172W	ECO1/YFR027W
ENP2/YGR145W	ERB1/YMR049C	ERG29/YMR134W	FCF2/YLR051C	GAS1/YMR307W
GDH1/YOR375C	GPI19/YDR437W	GRX1/YCL035C	GRX2/YDR513W	GWT1/YJL091C
HAS1/YMR290C	HPR1/YDR138W	ICP55/YER078C	IMP1/YMR150C	IMP2/YMR035W
INN1/YNL152W	IPI3/YNL182C	JIP5/YPR169W	KEI1/YDR367W	KEX1/YGL203C
LAP4/YKL103C	LIP1/YMR298W	LOC1/YFR001W	MAP1/YLR244C	MAP2/YBL091C
MAS1/YLR163C	MAS2/YHR024C	MCA1/YOR197W	MDH1/YKL085W	MKC7/YDR144C
MMS4/YBR098W	MPP6/YNR024W	MRT4/YKL009W	NAM7/YMR080C	NIP7/YPL211W
NOG1/YPL093W	NOG2/YNR053C	NOP15/YNL110C	NOP16/YER002W	NOP2/YNL061W
NSA1/YGL111W	NSA2/YER126C	NSE3/YDR288W	NSE5/YML023C	NUS1/YDL193W
OAC1/YKL120W	OCT1/YKL134C	PAM18/YLR008C	PAN2/YGL094C	PAN3/YKL025C
PEP4/YPL154C	PEX10/YDR265W	PGA1/YNL158W	PGA2/YNL149C	PHS1/YJL097W
PRC1/YMR297W	PRX1/YBL064C	RCE1/YMR274C	RIX1/YHR197W	RLP24/YLR009W
RLP7/YNL002C	RMP1/YLR145W	RPF1/YHR088W	RPF2/YKR081C	RRP1/YDR087C
RRS1/YOR294W	RSP5/YER125W	RTT106/YNL206C	SAC3/YDR159W	SEC11/YIR022W
SEC39/YLR440C	SEN15/YMR059W	SEN2/YLR105C	SEN34/YAR008W	SEN54/YPL083C
SPC3/YLR066W	SPP382/YLR424W	SUB2/YDL084W	SWC4/YGR002C	THO2/YNL139C
THP1/YOL072W	TIF6/YPR016C	TRM112/YNR046W	TRR1/YDR353W	TRR2/YHR106W
TRX1/YLR043C	TRX2/YGR209C	TRZ1/YKR079C	TSA1/YML028W	TSA2/YDR453C
UBP3/YER151C	UPF3/YGR072W	USV1/YPL230W	UTP11/YKL099C	UTP14/YML093W
UTP23/YOR004W	UTP5/YDR398W	YPP1/YGR198W	YTM1/YOR272W	YBL028C
YBR139W	YDR196C	YFR006W	YGR277C	YHR113W
YHR122W	YIL083C	YJR012C	YJR136C	YJR141W
YKL088W	YLR132C	YLR243W	YML131W	YNL181W
YNL260C	YOL057W	YOR060C	YOR251C

GO Annotation Information - August 19, 2008

During the past week, the GO annotations have been updated for the following features:

List of Features with GO Annotations Updated During the Past Week
CCR4/YAL021C	CDC10/YCR002C	CDC11/YJR076C	CDC12/YHR107C	CDC3/YLR314C
DDC1/YPL194W	DOM34/YNL001W	DPB11/YJL090C	DST1/YGL043W	DYN2/YDR424C
FRQ1/YDR373W	FYV10/YIL097W	GAP1/YKR039W	GAR1/YHR089C	GDH1/YOR375C
GDT1/YBR187W	GID7/YCL039W	GID8/YMR135C	HER1/YOR227W	HER2/YMR293C
HRD3/YLR207W	IME4/YGL192W	MEC3/YLR288C	NOP1/YDL014W	NOP58/YOR310C
POP2/YNR052C	PUT4/YOR348C	RAD17/YOR368W	RAD24/YER173W	RDS3/YPR094W
RFC2/YJR068W	RFC3/YNL290W	RFC4/YOL094C	RFC5/YBR087W	RMD5/YDR255C
RRP4/YHR069C	RXT3/YDL076C	SDS22/YKL193C	SHS1/YDL225W	SIK1/YLR197W
SNR128/snR128	SNR13/snR13	SNR17B/snR17b	SNR18/snR18	SNR190/snR190
SNR24/snR24	SNR4/snR4	VID24/YBR105C	VID28/YIL017C	VID30/YGL227W
YIL091C

New Summary Paragraphs - August 12, 2008

List of Summary Paragraphs Added During the Past Week
MET13/YGL125W	SCR1	SEC65/YML105C	SRP14/YDL092W	SRP21/YKL122C
SRP54/YPR088C	SRP68/YPL243W	SRP72/YPL210C

GO Annotation Information - August 12, 2008

During the past week, the GO annotations have been updated for the following features:

List of Features with GO Annotations Updated During the Past Week
ACM1/YPL267W	ATG13/YPR185W	ATG23/YLR431C	AUR1/YKL004W	CCR4/YAL021C
CHK1/YBR274W	CRM1/YGR218W	DOT1/YDR440W	HSP10/YOR020C	HSP60/YLR259C
JLP1/YLL057C	LSM2/YBL026W	LSM4/YER112W	LSM6/YDR378C	MET12/YPL023C
MET13/YGL125W	NTE1/YML059C	POP2/YNR052C	PPX1/YHR201C	PRP24/YMR268C
RET2/YFR051C	SPC72/YAL047C	SSN2/YDR443C	THI4/YGR144W	YPT1/YFL038C
YPT11/YNL304W

New Summary Paragraphs - August 5, 2008

GO Annotation Information - August 5, 2008

During the past week, the GO annotations have been updated for the following features:

List of Features with GO Annotations Updated During the Past Week
ARA1/YBR149W	CHS7/YHR142W	CSM4/YPL200W	DNL4/YOR005C	EST2/YLR318W
GCY1/YOR120W	GRE3/YHR104W	GSF2/YML048W	HOM3/YER052C	IVY1/YDR229W
KTI11/YBL071W-A	MET12/YPL023C	MET13/YGL125W	MPS3/YJL019W	MRC1/YCL061C
NAF1/YNL124W	NDJ1/YOL104C	NUS1/YDL193W	PGA2/YNL149C	PHO86/YJL117W
PHS1/YJL097W	PMR1/YGL167C	RAD61/YDR014W	RNA1/YMR235C	RNR1/YER070W
RNR2/YJL026W	RNR3/YIL066C	RNR4/YGR180C	RPO41/YFL036W	SHQ1/YIL104C
SYT1/YPR095C	TAR1/YLR154W-C	TMA29/YMR226C	TOF1/YNL273W	VPS74/YDR372C
YPR1/YDR368W	YDL124W	YGL039W	YJR096W

SGD Quarterly Newsletter - July 31, 2008

SGD sends out its quarterly newsletter to colleagues designated as contacts in SGD. An HTML version of the newsletter is available. If you would like to receive this letter in the future please use the Colleague Submission/Update form to let us know.

GO Annotation Information - July 29, 2008

During the past week, the GO annotations have been updated for the following features:

List of Features with GO Annotations Updated During the Past Week
BLM10/YFL007W	CDC14/YFR028C	DRE2/YKR071C	ERP3/YDL018C	ERP4/YOR016C
ERP5/YHR110W	ERP6/YGL002W	LOH1/YJL038C	MDE1/YJR024C	NUS1/YDL193W
PHS1/YJL097W	POL31/YJR006W	POL32/YJR043C	PRE4/YFR050C	RPN2/YIL075C
SEC39/YLR440C	SEC65/YML105C	SLM1/YIL105C	SLM2/YNL047C	SML1/YML058W
SOR2/YDL246C	SRP54/YPR088C	TAF1/YGR274C	TAF10/YDR167W	TAF11/YML015C
TAF12/YDR145W	TAF13/YML098W	TAF4/YMR005W	TAF6/YGL112C	TAF7/YMR227C
TAF8/YML114C	TAF9/YMR236W	TOF2/YKR010C	TRA1/YHR099W	ULS1/YOR191W
UTR4/YEL038W	XYL2/YLR070C

MORE Functional Predictions Available as GO Annotations - July 23, 2008

SGD has incorporated computational GO annotations from a method published in Tian et. al., Genome Biology 2008 that combines guilt-by-profiling and guilt-by-association analysis to infer gene function. These data can be viewed in the computational GO annotation section (for example, see GO annotations for YCR041W). Links to gene pages at the YeastFunc viewer are available on the GO Annotation details page in the 'Assigned By' column and in the 'Functional Analysis' pull-down on the righthand side of the Locus Summary pages. Thanks to Weidong Tian, John Beaver, and Fritz Roth for working with SGD on incorporating these data and links.

New Summary Paragraphs - July 22, 2008

List of Summary Paragraphs Added During the Past Week
BFR2/YDR299W	BMS1/YPL217C	BUD21/YOR078W	DBP8/YHR169W	DIM1/YPL266W
DIP2/YLR129W	ECM16/YMR128W	EMG1/YLR186W	ENP1/YBR247C	ENP2/YGR145W
FCF1/YDR339C	HAS1/YMR290C	IMP3/YHR148W	IMP4/YNL075W	KRE33/YNL132W
KRR1/YCL059C	MPP10/YJR002W	MRD1/YPR112C	NAN1/YPL126W	NOC4/YPR144C
NOP14/YDL148C	NOP9/YJL010C	PNO1/YOR145C	PWP2/YCR057C	RCL1/YOL010W
ROK1/YGL171W	RRP12/YPL012W	RRP5/YMR229C	SAS10/YDL153C	SCL1/YGL011C
SLX9/YGR081C	SNR17A/snR17a	SNR17B/snR17b	SNU13/YEL026W	SOF1/YLL011W
TSR1/YDL060W	UTP10/YJL109C	UTP11/YKL099C	UTP13/YLR222C	UTP14/YML093W
UTP15/YMR093W	UTP18/YJL069C	UTP20/YBL004W	UTP21/YLR409C	UTP22/YGR090W
UTP23/YOR004W	UTP30/YKR060W	UTP4/YDR324C	UTP5/YDR398W	UTP6/YDR449C
UTP7/YER082C	UTP8/YGR128C	UTP9/YHR196W	YLR003C

GO Annotation Information - July 22, 2008

During the past week, the GO annotations have been updated for the following features:

List of Features with GO Annotations Updated During the Past Week
AHA1/YDR214W	AHC2/YCR082W	AIP1/YMR092C	ARP7/YPR034W	ARP9/YMR033W
ARR1/YPR199C	ASE1/YOR058C	ATG15/YCR068W	ATG3/YNR007C	ATG4/YNL223W
ATG8/YBL078C	BBC1/YJL020C	BSP1/YPR171W	COQ4/YDR204W	CRN1/YLR429W
DCN1/YLR128W	EAP1/YKL204W	ECO1/YFR027W	ENA1/YDR040C	ERG6/YML008C
EST3/YIL009C-A	FYV4/YHR059W	GAR1/YHR089C	GCN2/YDR283C	HIT1/YJR055W
HOC1/YJR075W	HSL7/YBR133C	HSP10/YOR020C	HSP60/YLR259C	LAS17/YOR181W
LDB19/YOR322C	MAF1/YDR005C	MDM20/YOL076W	MGM1/YOR211C	MKS1/YNL076W
MKT1/YNL085W	MNN9/YPL050C	MRPL32/YCR003W	MYO3/YKL129C	MYO5/YMR109W
NHP2/YDL208W	NOB1/YOR056C	NOP10/YHR072W-A	PET191/YJR034W	RLM1/YPL089C
RRP43/YCR035C	RSC1/YGR056W	RSC2/YLR357W	RSC3/YDR303C	RSC30/YHR056C
RSC4/YKR008W	RSC6/YCR052W	RSC8/YFR037C	RSC9/YML127W	RTC1/YOL138C
SFH1/YLR321C	SHE2/YKL130C	SHE3/YBR130C	SMD1/YGR074W	SNF3/YDL194W
SNT1/YCR033W	SOR1/YJR159W	STH1/YIL126W	UBA1/YKL210W	UFD2/YDL190C
VAN1/YML115C	VTS1/YOR359W	WHI2/YOR043W	XDJ1/YLR090W	YBR284W
YDL118W	YDL124W	YDR532C	YEL057C	YGL039W
YGR042W	YGR160W	YHL012W	YOR008C-A	YPL041C

Expanded Phenotype Data and New Curation System - July 17, 2008

SGD is now releasing our improved and expanded mutant phenotype pages. Over the past year, we re-curated existing mutant phenotypes and added more phenotype data, both using a new controlled-vocabulary system. The implementation of this system greatly increases the amount of detailed information that can be captured for each phenotype, and facilitates searching and comparison of mutant phenotypes.

Each phenotype annotation contains a term representing the entity or process that is observed (e.g., sporulation efficiency, carbon source utilization, cell size) and a qualifier that describes the effect on that entity or process in the mutant (e.g., decreased, increased, abnormal). Additional fields display information such as strain background, allele name, conditions under which the phenotype is observed, or the identity of relevant chemicals. A brief version of the phenotype is displayed on the Locus Summary page for each gene, and the complete information is accessible via the 'Phenotype' tab at the top of the page (for example, see WHI3). SGD now contains more than 25,000 phenotype annotations, nearly double the previous number, and we will continue to build upon this annotation with the aim of providing comprehensive phenotype information. All of the information is searchable and may also be downloaded in bulk using SGD's Batch Download tool or FTP site.

Functional Predictions Available as GO Annotations - July 17, 2008

SGD has incorporated computational GO annotations from the functional predictions based on the analysis of multiple high-throughput datasets published in Huttenhower and Troyanskaya, 2008. This method is described further in Myers et al., 2005, Myers et al., 2007, and Huttenhower et al., 2006. These data can be viewed in the computational GO annotation section (for example, see GO annotations for YDL156W). Thanks to Curtis Huttenhower and Olga Troyanskaya for working with SGD on incorporating these data.

Improvements to the SGD Search - July 17, 2008

The SGD Quick Search has been expanded to retrieve information from 14 major categories including: names, descriptions, functional information, phenotype data, colleagues, authors, and external IDs. Results are now organized under topic headings that group similar types of information. This basic search is accessible from the top of most SGD pages, as well as from the Search Options page.

Improved Display, Sorting and Filtering of Interaction Data - July 17, 2008

The Interactions page has been updated to allow physical and genetic interactions to be sorted and filtered based on an experimental method, reference, or phenotype. This table also includes notes about the interaction as well as the annotation type to facilitate the identification of high-throughput datasets. SGD now includes 121,580 curated physical and genetic interactions from the BioGRID version 2.0.42 release. New interactions are added on a monthly basis. These data are available over the web and via bulk download through both BioGRID and a new FTP file at SGD.

New Summary Paragraphs - July 15, 2008

List of Summary Paragraphs Added During the Past Week
AIM10/YER087W	ALA1/YOR335C	CDC60/YPL160W	DED81/YHR019C	DIA4/YHR011W
DPS1/YLL018C	FRS1/YLR060W	FRS2/YFL022C	GLN4/YOR168W	GRS1/YBR121C
GRS2/YPR081C	GUS1/YGL245W	HTS1/YPR033C	ILS1/YBL076C	ISM1/YPL040C
KRS1/YDR037W	MES1/YGR264C	MSD1/YPL104W	MSE1/YOL033W	MSF1/YPR047W
MSK1/YNL073W	MSM1/YGR171C	MSR1/YHR091C	MST1/YKL194C	MSW1/YDR268W
MSY1/YPL097W	NAM2/YLR382C	SES1/YDR023W	SLM5/YCR024C	THS1/YIL078W
TYS1/YGR185C	VAS1/YGR094W	WRS1/YOL097C	YDR341C	YHR020W
YNL247W

GO Annotation Information - July 15, 2008

During the past week, the GO annotations have been updated for the following features:

List of Features with GO Annotations Updated During the Past Week
CDC55/YGL190C	FOL2/YGR267C	MPS1/YDL028C	MPS2/YGL075C	NOP1/YDL014W
NOP58/YOR310C	POL3/YDL102W	RRP9/YPR137W	SAL1/YNL083W	SDA1/YGR245C
SIK1/YLR197W	SNR17A/snR17a	SNU13/YEL026W	SWE1/YJL187C	THS1/YIL078W
VPS74/YDR372C

New Summary Paragraphs - July 8, 2008

GO Annotation Information - July 8, 2008

During the past week, the GO annotations have been updated for the following features:

List of Features with GO Annotations Updated During the Past Week
CBP3/YPL215W	CBP4/YGR174C	CDC1/YDR182W	DEG1/YFL001W	ESF2/YNR054C
INP51/YIL002C	INP52/YNL106C	INP53/YOR109W	INP54/YOL065C	MDM30/YLR368W
NOP1/YDL014W	PRE1/YER012W	PRE2/YPR103W	PUF4/YGL014W	PUS1/YPL212C
PUS2/YGL063W	PUS4/YNL292W	PUS9/YDL036C	QCR7/YDR529C	RIB2/YOL066C
ROT1/YMR200W	RPL30/YGL030W	RPT6/YGL048C	RRP9/YPR137W	SAC3/YDR159W
SNR45/snR45	SNR63/snR63	SNU13/YEL026W	SRP54/YPR088C	STM1/YLR150W
TCM62/YBR044C	UTP21/YLR409C	UTP4/YDR324C	UTP8/YGR128C	UTP9/YHR196W
VPS74/YDR372C

New Summary Paragraphs - July 1, 2008

List of Summary Paragraphs Added During the Past Week
FIG4/YNL325C	GCV3/YAL044C	MSS4/YDR208W	SAC1/YKL212W	SOD2/YHR008C
YMR1/YJR110W

GO Annotation Information - July 1, 2008

During the past week, the GO annotations have been updated for the following features:

List of Features with GO Annotations Updated During the Past Week
ATG14/YBR128C	BRE5/YNR051C	CMC1/YKL137W	COA1/YIL157C	COX12/YLR038C
COX17/YLL009C	COX19/YLL018C-A	COX20/YDR231C	KRE33/YNL132W	KRR1/YCL059C
KRS1/YDR037W	MUB1/YMR100W	PAP2/YOL115W	PEP1/YBL017C	PET100/YDR079W
PET117/YER058W	PET191/YJR034W	PET309/YLR067C	POL30/YBR088C	PRE10/YOR362C
PRE3/YJL001W	PRE4/YFR050C	PRE5/YMR314W	PRE6/YOL038W	PRE8/YML092C
PRE9/YGR135W	PUP1/YOR157C	PUP2/YGR253C	RPN1/YHR027C	RPN11/YFR004W
RPN12/YFR052W	RPN13/YLR421C	RPN2/YIL075C	RPN5/YDL147W	RPN6/YDL097C
RPN8/YOR261C	RPN9/YDR427W	RPP0/YLR340W	RPS0A/YGR214W	RPS11A/YDR025W
RPS11B/YBR048W	RPS13/YDR064W	RPS14A/YCR031C	RPS16A/YMR143W	RPS1A/YLR441C
RPS1B/YML063W	RPS3/YNL178W	RPS4A/YJR145C	RPS4B/YHR203C	RPS5/YJR123W
RPS6A/YPL090C	RPS7A/YOR096W	RPS8A/YBL072C	RPS8B/YER102W	RPS9A/YPL081W
RPS9B/YBR189W	RPT6/YGL048C	RTT109/YLL002W	SCL1/YGL011C	SEM1/YDR363W-A
SHY1/YGR112W	SNR128/snR128	SNR17A/snR17a	SNR17B/snR17b	SOD2/YHR008C
SSE1/YPL106C	UBP3/YER151C	UBR2/YLR024C	VPS30/YPL120W	VPS38/YLR360W
VPS75/YNL246W	VTS1/YOR359W	YOL057W

New Summary Paragraphs - June 24, 2008

GO Annotation Information - June 24, 2008

During the past week, the GO annotations have been updated for the following features:

List of Features with GO Annotations Updated During the Past Week
COA2/YPL189C-A	EFG1/YGR271C-A	FAB1/YFR019W	FCF1/YDR339C	FCF2/YLR051C
FLO8/YER109C	FOX2/YKR009C	FUS2/YMR232W	INN1/YNL152W	KAE1/YKR038C
KEG1/YFR042W	KRS1/YDR037W	LSB6/YJL100W	MMS1/YPR164W	MMS22/YLR320W
PXR1/YGR280C	SMT3/YDR510W	SNR10/snR10	SWC4/YGR002C	TPI1/YDR050C
TRS23/YDR246W	UTP23/YOR004W	VAC7/YNL054W	VPS4/YPR173C	YGR251W
YHR020W

GO Annotation Information - June 17, 2008

During the past week, the GO annotations have been updated for the following features:

List of Features with GO Annotations Updated During the Past Week
BFR2/YDR299W	CTA1/YDR256C	PUS7/YOR243C	REX2/YLR059C	REX3/YLR107W
REX4/YOL080C	RFM1/YOR279C	RMD5/YDR255C	RNH70/YGR276C	RRP6/YOR001W
SNR43/snR43	SNU13/YEL026W	SUM1/YDR310C	TRZ1/YKR079C

New Summary Paragraphs - June 10, 2008

List of Summary Paragraphs Added During the Past Week
INP51/YIL002C	INP52/YNL106C	INP53/YOR109W	INP54/YOL065C	LSB6/YJL100W
NFU1/YKL040C	PIK1/YNL267W	STT4/YLR305C

GO Annotation Information - June 10, 2008

During the past week, the GO annotations have been updated for the following features:

List of Features with GO Annotations Updated During the Past Week
ACM1/YPL267W	AIM1/YAL046C	AIM33/YML087C	ATG11/YPR049C	ATG15/YCR068W
ATG20/YDL113C	ATG21/YPL100W	ATG23/YLR431C	ATG27/YJL178C	CAF20/YOR276W
CKA1/YIL035C	CKA2/YOR061W	CKB1/YGL019W	CKB2/YOR039W	DCD1/YHR144C
DEM1/YBR163W	DGK1/YOR311C	DIP2/YLR129W	DRE2/YKR071C	EAR1/YMR171C
ESF2/YNR054C	FAB1/YFR019W	FIG4/YNL325C	FMP37/YGL080W	FYV10/YIL097W
GCV3/YAL044C	GEM1/YAL048C	GID7/YCL039W	GID8/YMR135C	GTR1/YML121W
GTR2/YGR163W	HGH1/YGR187C	HSF1/YGL073W	HUL5/YGL141W	IMP3/YHR148W
IMP4/YNL075W	INH1/YDL181W	INP51/YIL002C	INP52/YNL106C	INP53/YOR109W
INP54/YOL065C	IRC21/YMR073C	LRC3/YKL207W	LSB6/YJL100W	LTV1/YKL143W
MAL22	MAL42	MDJ1/YFL016C	MEH1/YKR007W	MGE1/YOR232W
MMR1/YLR190W	MPP10/YJR002W	MSS4/YDR208W	NAN1/YPL126W	PGA3/YML125C
PGC1/YPL206C	PIK1/YNL267W	PUF3/YLL013C	PWP2/YCR057C	REX2/YLR059C
REX3/YLR107W	RMD5/YDR255C	RNH70/YGR276C	RRP7/YCL031C	SAC1/YKL212W
SEC3/YER008C	SIR3/YLR442C	SLM4/YBR077C	SNO1/YMR095C	SNX3/YOR357C
SNX4/YJL036W	SPO14/YKR031C	SSC1/YJR045C	SSH4/YKL124W	STF1/YDL130W-A
STF2/YGR008C	STT4/YLR305C	SWC4/YGR002C	UBC8/YEL012W	UBP14/YBR058C
UFD2/YDL190C	UTP10/YJL109C	UTP13/YLR222C	UTP15/YMR093W	UTP18/YJL069C
UTP21/YLR409C	UTP22/YGR090W	UTP4/YDR324C	UTP5/YDR398W	UTP6/YDR449C
UTP8/YGR128C	UTP9/YHR196W	VPS34/YLR240W	YMR1/YJR110W	YPT11/YNL304W
YHR122W	YLL023C	YLR064W	YOR164C	YOR262W

Sequence and Annotation Updates - June 6, 2008

SGD curators periodically update the systematic sequence and its annotation. Information regarding changes can be found via the Summary of Chromosome Sequence and Annotation Updates and in the "Locus History" pages of affected features. Files on the SGD FTP site are updated weekly.

Between 2008-06-02 and 2008-06-06, the sequences of Chromosomes IV, X, and XI were updated, affecting ORFs YDL038C, PRM7/YDL039C, BUD4/YJR092W, and ASK1/YKL052C; the annotation of ORFs LSB3/YFR024C-A, and ADH4/YGL256W on Chromosomes VI and VII were udpated; and a new LTR YCLWdelta15 was annotated on Chromosome III.

GO Annotation Information - June 3, 2008

During the past week, the GO annotations have been updated for the following features:

List of Features with GO Annotations Updated During the Past Week
ATG16/YMR159C	ATG17/YLR423C	ATG18/YFR021W	ATG19/YOL082W	ATG20/YDL113C
ATG21/YPL100W	ATG22/YCL038C	ATG23/YLR431C	ATG27/YJL178C	ATG29/YPL166W
CIS1/YDR022C	GRX1/YCL035C	GRX2/YDR513W	GRX3/YDR098C	GRX4/YER174C
GRX5/YPL059W	GVP36/YIL041W	PRP8/YHR165C	RNH1/YMR234W	RNH201/YNL072W
SMY2/YBR172C	SNU114/YKL173W	SNX4/YJL036W	SPT20/YOL148C	TRX1/YLR043C
TRX2/YGR209C	TRX3/YCR083W	VPS15/YBR097W	VPS30/YPL120W	VPS34/YLR240W
YBP2/YGL060W

GO Annotation Information - May 27, 2008

During the past week, the GO annotations have been updated for the following features:

List of Features with GO Annotations Updated During the Past Week
ATG13/YPR185W	ATG14/YBR128C	CDC5/YMR001C	MATALPHA2/YCR039C	MBP1/YDL056W
MPP10/YJR002W	MRD1/YPR112C	NFU1/YKL040C	PGC1/YPL206C	RCL1/YOL010W
REX2/YLR059C	REX3/YLR107W	REX4/YOL080C	RNH70/YGR276C	RPN13/YLR421C
RRP5/YMR229C	RTR1/YER139C	SSQ1/YLR369W	SWI4/YER111C	SWI6/YLR182W
VPS15/YBR097W	VPS30/YPL120W	VPS34/YLR240W	VPS38/YLR360W