Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Ai HW (2012) Biochemical analysis with the expanded genetic lexicon. Anal Bioanal Chem () | Other large-scale proteomic analysis |
| Albulescu LO, et al. (2012) A Quantitative, High-Throughput Reverse Genetic Screen Reveals Novel Connections between Pre-mRNA Splicing and 5' and 3' End Transcript Determinants. PLoS Genet 8(3):e1002530 | Genomic expression study |
| Ali A, et al. (2012) Reproduction-time statistics and segregation patterns in growing populations. Phys Rev E Stat Nonlin Soft Matter Phys 85(2-1):021923 | Computational analysis |
| Ambroise J, et al. (2012) Transcriptional network inference from functional similarity and expression data: a global supervised approach. Stat Appl Genet Mol Biol 11(1):1-24 | Computational analysis |
| Amoutzias GD, et al. (2012) Evaluation and properties of the budding yeast phosphoproteome. Mol Cell Proteomics () | Large-scale protein modification |
| Andrews SS (2012) Spatial and stochastic cellular modeling with the smoldyn simulator. Methods Mol Biol 804():519-42 | Computational analysis |
| Angermann BR, et al. (2012) Computational modeling of cellular signaling processes embedded into dynamic spatial contexts.LID - 10.1038/nmeth.1861 [doi] Nat Methods () | Computational analysis |
| Baller JA, et al. (2012) A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon. Genome Res () | Other genomic analysis |
| Bandyopadhyay N, et al. (2012) Sslpred: predicting synthetic sickness lethality. Pac Symp Biocomput ():7-18 | Computational analysis |
| Beasley-Green A, et al. (2012) A proteomics performance standard to support measurement quality in proteomics. Proteomics 12(7):923-31 | Large-scale protein detection |
| Ben-Shitrit T, et al. (2012) Systematic identification of gene annotation errors in the widely used yeast mutation collections.LID - 10.1038/nmeth.1890 [doi] Nat Methods () | Computational analysis , Large-scale phenotype analysis |
| Bester MC, et al. (2012) Many Saccharomyces cerevisiae Cell Wall Protein Encoding Genes Are Coregulated by Mss11, but Cellular Adhesion Phenotypes Appear Only Flo Protein Dependent. G3 (Bethesda) 2(1):131-41 | Genomic expression study |
| Blackman RK, et al. (2012) Mitochondrial electron transport is the cellular target of the oncology drug elesclomol. PLoS One 7(1):e29798 | Large-scale phenotype analysis |
| Blount BA, et al. (2012) Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology. PLoS One 7(3):e33279 | Computational analysis |
| Bogumil D, et al. (2012) Chaperones divide yeast proteins into classes of expression level and evolutionary rate. Genome Biol Evol () | Computational analysis |
| Bowsher CG and Swain PS (2012) Identifying sources of variation and the flow of information in biochemical networks. Proc Natl Acad Sci U S A () | Computational analysis |
| Breidenbach MA, et al. (2012) Mapping yeast N-glycosites with isotopically recoded glycans. Mol Cell Proteomics () | Large-scale protein modification |
| Brush GS, et al. (2012) Yeast IME2 Functions Early in Meiosis Upstream of Cell Cycle-Regulated SBF and MBF Targets. PLoS One 7(2):e31575 | Genomic expression study |
| Bustard DE, et al. (2012) During replication stress Non-Smc-Element 5 is required for Smc5/6 complex functionality at stalled forks. J Biol Chem () | Genomic co-immunoprecipitation study |
| Cao J, et al. (2012) Modeling gene regulation networks using ordinary differential equations. Methods Mol Biol 802():185-97 | Computational analysis |
| Carrillo E, et al. (2012) Characterizing roles of Met31 and Met32 in coordinating Met4-activated transcription in the absence of Met30. Mol Biol Cell () | Genomic co-immunoprecipitation study , Genomic expression study |
| Casamayor A, et al. (2012) The role of the Snf1 kinase in the adaptive response of Saccharomyces cerevisiae to alkaline pH stress. Biochem J () | Computational analysis , Genomic expression study |
| Chang DT, et al. (2012) A study on promoter characteristics of head-to-head genes in Saccharomyces cerevisiae. BMC Genomics 13 Suppl 1():S11 | Computational analysis |
| Chen G, et al. (2012) Using model organism Saccharomyces cerevisiae to evaluate the effects of ELF-MF and RF-EMF exposure on global gene expression.LID - 10.1002/bem.21724 [doi] Bioelectromagnetics () | Genomic expression study |
| Chen J, et al. (2012) Identification of a small molecule yeast TORC1 inhibitor with a flow cytometry based multiplex screen. ACS Chem Biol () | Genomic expression study |
| Chen MJ, et al. (2012) De novo motif discovery facilitates identification of interactions between transcription factors in Saccharomyces cerevisiae. Bioinformatics () | Computational analysis |
| Chen N, et al. (2012) Genome-based kinetic modeling of cytosolic glucose metabolism in industrially relevant cell lines: Saccharomyces cerevisiae and Chinese hamster ovary cells. Bioprocess Biosyst Eng () | Computational analysis |
| Chen W, et al. (2012) Prediction of replication origins by calculating DNA structural properties. FEBS Lett 586(6):934-8 | Other genomic analysis |
| Chen X and Burgoyne RD (2012) Identification of common genetic modifiers of neurodegenerative diseases from an integrative analysis of diverse genetic screens in model organisms. BMC Genomics 13(1):71 | Other genomic analysis |
| Chesi A, et al. (2012) The Role of the Parkinson's Disease Gene PARK9 in Essential Cellular Pathways and the Manganese Homeostasis Network in Yeast. PLoS One 7(3):e34178 | Large-scale genetic interaction , Large-scale phenotype analysis |
