CDC13 / YDL220C Overview
- Standard Name
- CDC13 1 2
- Systematic Name
- YDL220C
- SGD ID
- SGD:S000002379
- Aliases
- EST4 28
- Feature Type
- ORF , Verified
- Description
- Single stranded DNA-binding protein found at TG1-3 telomere G-tails; key roles regulating telomerase, telomere end protection, and telomere replication; can dynamically intermolecularly exchange between telomeric single-stranded DNA molecules; essential function is telomere capping; forms homodimer via N-terminus; disruption of dimerization leads to short telomeres; autophagy and proteasome are involved in Cdc13p degradation; differentially phosphorylated through cell cycle 3 5 6 7 8
- Name Description
- Cell Division Cycle 4
- Comparative Info
-
Sequence
The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.
Analyze Sequence
S288C only
BLASTN | BLASTP | Design Primers | Restriction Fragment Map | Restriction Fragment Sizes | Six-Frame Translation
S288C vs. other species
BLASTN vs. fungi | BLASTP at NCBI | BLASTP vs. fungi
S288C vs. other strains
Protein
Basic sequence-derived (length, molecular weight, isoelectric point) and experimentally-determined (median abundance, median absolute deviation) protein information. Click "Protein Details" for further information about the protein such as half-life, abundance, domains, domains shared with other proteins, protein sequence retrieval for various strains, physico-chemical properties, protein modification sites, and external identifiers for the protein.
- Length (a.a.)
- 924
- Mol. Weight (Da)
- 104895.2
- Isoelectric Point
- 6.55
- Median Abundance (molecules/cell)
- 319 +/- 231
- Half-life (hr)
- 7.0
Alleles
Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.
View all CDC13 alleles in SGD search
Gene Ontology
GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.
- Summary
- Single-stranded telomeric DNA-binding protein and telomerase inhibitor; negative regulator of telomerase involved in telomerase-dependent telomerase maintenance, telomere capping, and the recruitment of the telomerase complex to telomeres in S phase; subunit of the CST complex that localizes to the telomeric region of chromosomes
View computational annotations
Molecular Function
- Manually Curated
- enables single-stranded telomeric DNA binding (IMP, IDA)
- enables telomerase inhibitor activity (IDA)
- enables translation elongation factor binding (IDA)
Biological Process
- Manually Curated
- acts upstream of or within negative regulation of DNA duplex unwinding (IDA)
- involved in regulation of telomere maintenance via telomerase (IGI, IDA)
- involved in ribonucleoprotein complex localization (IMP)
- involved in telomere capping (IMP)
- involved in telomere maintenance (IMP)
- involved in telomere maintenance via telomerase (IGI, IMP)
Cellular Component
- Manually Curated
- located in chromosome, telomeric region (IDA)
- part of CST complex (IPI)
Complex
Macromolecular complex annotations are imported from the Complex Portal. These annotations have been derived from physical molecular interaction evidence extracted from the literature and cross-referenced in the entry, or by curator inference from information on homologs in closely related species or by inference from scientific background.
Phenotype
Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.
- Summary
- Essential gene; conditional mutant displays a large budded cell cycle arrest with nuclei situated at the mother-bud neck; allele specific increase or decrease in telomere length; overexpression results in decreased growth rate, increased cell size, and altered cell cycle progression in G2 phase; some mutants display increased senescence, colony sectoring and apoptosis; homozygous conditional mutant is unable to sporulate
Classical Genetics
- conditional
- null
- overexpression
- reduction of function
- chitin deposition: increased
- chromosome/plasmid maintenance: abnormal
- heat sensitivity: increased
- lifespan: decreased
- mitotic recombination: increased
- protein/peptide distribution: abnormal
- resistance to chemicals: decreased
- sporulation: absent
- telomere length: decreased
- telomere length: increased
- vegetative growth: normal
- unspecified
- repressible
- null
- overexpression
- repressible
- reduction of function
- conditional
Large-scale Survey
Interaction
Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.
1321 total interactions for 810 unique genes
Physical Interactions
- Affinity Capture-MS: 11
- Affinity Capture-RNA: 6
- Affinity Capture-Western: 23
- Biochemical Activity: 24
- Co-crystal Structure: 3
- Co-localization: 1
- Co-purification: 1
- Reconstituted Complex: 15
- Two-hybrid: 35
Genetic Interactions
- Dosage Growth Defect: 6
- Dosage Lethality: 3
- Dosage Rescue: 15
- Negative Genetic: 312
- Phenotypic Enhancement: 35
- Phenotypic Suppression: 60
- Positive Genetic: 221
- Synthetic Growth Defect: 174
- Synthetic Lethality: 43
- Synthetic Rescue: 333
Regulation
The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.
- Regulators
- 5
- Targets
- 0
Expression
Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.
Summary Paragraph
A summary of the locus, written by SGD Biocurators following a thorough review of the literature. Links to gene names and curated GO terms are included within the Summary Paragraphs.
Last Updated: 2007-06-27
Literature
All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.