Dutagaci B, et al. (2023) Characterization of RNA polymerase II trigger loop mutations using molecular dynamics simulations and machine learning. PLoS Comput Biol 19(3):e1010999 PMID:36947548
Shida T, et al. (2020) Short disordered protein segment regulates cross-species transmission of a yeast prion. Nat Chem Biol 16(7):756-765 PMID:32284601
Wang B, et al. (2015) Five checkpoints maintaining the fidelity of transcription by RNA polymerases in structural and energetic details. Nucleic Acids Res 43(2):1133-46 PMID:25550432
Wang B, et al. (2013) Energetic and structural details of the trigger-loop closing transition in RNA polymerase II. Biophys J 105(3):767-75 PMID:23931324
Feig M and Burton ZF (2010) RNA polymerase II with open and closed trigger loops: active site dynamics and nucleic acid translocation. Biophys J 99(8):2577-86 PMID:20959099
Seibold SA, et al. (2010) Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase. Biochim Biophys Acta 1799(8):575-87 PMID:20478425