AAT2 / YLR027C Overview
- Standard Name
- AAT2 1
- Systematic Name
- YLR027C
- SGD ID
- SGD:S000004017
- Aliases
- ASP5 6
- Feature Type
- ORF , Verified
- Description
- Cytosolic aspartate aminotransferase involved in the metabolism of nitrogen and amino acids such as aspartate; localizes to and functions in peroxisomes in oleate-grown cells; moonlighting role as a ribosome-associated protein that modulates translation in response to stress 1 2 3
- Name Description
- Aspartate AminoTransferase 1
- Comparative Info
-
Sequence
The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.
Analyze Sequence
S288C only
BLASTN | BLASTP | Design Primers | Restriction Fragment Map | Restriction Fragment Sizes | Six-Frame Translation
S288C vs. other species
BLASTN vs. fungi | BLASTP at NCBI | BLASTP vs. fungi
S288C vs. other strains
Protein
Basic sequence-derived (length, molecular weight, isoelectric point) and experimentally-determined (median abundance, median absolute deviation) protein information. Click "Protein Details" for further information about the protein such as half-life, abundance, domains, domains shared with other proteins, protein sequence retrieval for various strains, physico-chemical properties, protein modification sites, and external identifiers for the protein.
- Length (a.a.)
- 418
- Mol. Weight (Da)
- 46061.1
- Isoelectric Point
- 8.55
- Median Abundance (molecules/cell)
- 32371 +/- 6504
- Half-life (hr)
- 12.7
Alleles
Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.
View all AAT2 alleles in SGD search
Gene Ontology
GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.
- Summary
- L-aspartate:2-oxoglutarate aminotransferase that binds pyridoxal phosphate; involved in amino acid metabolism ; localizes to mitochondria, peroxisome and cytsol
View computational annotations
Molecular Function
- Manually Curated
- enables L-aspartate:2-oxoglutarate aminotransferase activity (IMP, IDA)
- enables ribosomal large subunit binding (IDA)
Biological Process
- Manually Curated
- involved in aspartate biosynthetic process (IMP)
- acts upstream of or within negative regulation of translation in response to oxidative stress (IMP)
Cellular Component
- Manually Curated
- located in cytosol (IDA)
- located in peroxisome (IDA, IMP)
Pathways
Phenotype
Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.
- Summary
- Non-essential gene in S288C, but essential in the Sigma1278b background; S288C null mutant displays a decreased growth rate and decreased competitive fitness in rich medium, temperature sensitivity, and a decreased respiratory growth rate; null mutant is sensitive to DNA synthesis inhibitors, DNA damaging agents and topoisomerase inhibitors; null mutant has decreased resistance to hyperosmotic stress, metals, and zymolyase; null mutant displays decreased chronological lifespan; homozygous null mutant has decreased sporulation efficiency
Classical Genetics
- null
- auxotrophy
- chemical compound accumulation: decreased
- chemical compound accumulation: increased
- metal resistance: decreased
- metal resistance: increased
- oxidative stress resistance: decreased
- protein/peptide accumulation: increased
- protein/peptide modification: increased
- resistance to chemicals: decreased
- reduction of function
- null
- chemical compound accumulation: increased
- chronological lifespan: decreased
- competitive fitness: decreased
- heat sensitivity: increased
- hyperosmotic stress resistance: decreased
- inviable
- killer toxin resistance: increased
- metal resistance: decreased
- metal resistance: increased
- mitotic recombination: decreased
- replicative lifespan: decreased
- resistance to chemicals: decreased
- resistance to chemicals: increased
- resistance to enzymatic treatment: decreased
- respiratory growth: absent
- respiratory growth: decreased rate
- sporulation efficiency: decreased
- toxin resistance: decreased
- toxin resistance: increased
- vegetative growth: decreased rate
- viable
Large-scale Survey
Interaction
Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.
240 total interactions for 222 unique genes
Physical Interactions
- Affinity Capture-MS: 23
- Affinity Capture-RNA: 5
- Biochemical Activity: 1
- Co-purification: 1
- PCA: 8
- Protein-peptide: 5
- Proximity Label-MS: 3
- Reconstituted Complex: 3
- Two-hybrid: 1
Genetic Interactions
- Dosage Lethality: 1
- Negative Genetic: 126
- Phenotypic Suppression: 2
- Positive Genetic: 24
- Synthetic Growth Defect: 20
- Synthetic Lethality: 15
- Synthetic Rescue: 2
Regulation
The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.
- Regulators
- 12
- Targets
- 0
Expression
Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.
Summary Paragraph
A summary of the locus, written by SGD Biocurators following a thorough review of the literature. Links to gene names and curated GO terms are included within the Summary Paragraphs.
Last Updated: 1999-09-01
Literature
All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.