ATP1 / YBL099W Overview
- Standard Name
- ATP1 1
- Systematic Name
- YBL099W
- SGD ID
- SGD:S000000195
- Feature Type
- ORF , Verified
- Description
- Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase; which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; F1 translationally regulates ATP6 and ATP8 expression to achieve a balanced output of ATP synthase genes encoded in nucleus and mitochondria; phosphorylated; N-terminally propionylated in vivo 1 2 3 4
- Name Description
- ATP synthase 1
- Comparative Info
-
Sequence
The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.
Analyze Sequence
S288C only
BLASTN | BLASTP | Design Primers | Restriction Fragment Map | Restriction Fragment Sizes | Six-Frame Translation
S288C vs. other species
BLASTN vs. fungi | BLASTP at NCBI | BLASTP vs. fungi
S288C vs. other strains
Protein
Basic sequence-derived (length, molecular weight, isoelectric point) and experimentally-determined (median abundance, median absolute deviation) protein information. Click "Protein Details" for further information about the protein such as half-life, abundance, domains, domains shared with other proteins, protein sequence retrieval for various strains, physico-chemical properties, protein modification sites, and external identifiers for the protein.
- Summary
- Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase; phosphorylated; N-terminally propionylated
- Length (a.a.)
- 545
- Mol. Weight (Da)
- 58614.7
- Isoelectric Point
- 9.5
- Median Abundance (molecules/cell)
- 34971 +/- 10983
- Half-life (hr)
- 8.6
Alleles
Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.
View all ATP1 alleles in SGD search
Gene Ontology
GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.
- Summary
- Subunit of the catalytic core of the F1 sector of mitochondrial F1F0 ATP synthase; ATP synthase complex is localized to the mitochondrial inner membrane; Atp1p is also found in association with mitochondrial nucleoids
View computational annotations
Molecular Function
- Manually Curated
- contributes to ATP hydrolysis activity (IDA)
- contributes to proton-transporting ATP synthase activity, rotational mechanism (IMP, IDA)
Biological Process
- Manually Curated
- involved in proton motive force-driven ATP synthesis (IMP, IDA)
Cellular Component
- Manually Curated
- located in mitochondrial nucleoid (IDA)
- located in mitochondrion (IDA, HDA)
- part of proton-transporting ATP synthase, catalytic core (IDA, IMP)
Complex
Macromolecular complex annotations are imported from the Complex Portal. These annotations have been derived from physical molecular interaction evidence extracted from the literature and cross-referenced in the entry, or by curator inference from information on homologs in closely related species or by inference from scientific background.
Phenotype
Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.
- Summary
- Non-essential gene; null mutant has a decreased growth rate on rich medium, a severe respiratory growth defect, a decreased ability to utilize various nitrogen sources, decreased competitive fitness on a variety of media and decreased starvation resistance; null mutant has a reduced cell size; null mutant displays a reduced survival rate in stationary phase and decreased glycogen accumulation; null mutant has a reduced chronological lifespan (CLS), while gain-of-function mutants have increased CLS; null mutant has an elevated dietary restriction-induced replicative lifespan extension; null mutant has decreased resistance to acid and alkaline pH, desiccation and innate thermotolerance
Classical Genetics
- null
- acid pH resistance: decreased
- alkaline pH resistance: decreased
- anaerobic growth: decreased
- cell size: decreased
- chemical compound accumulation: decreased
- chronological lifespan: decreased
- competitive fitness: decreased
- desiccation resistance: decreased
- innate thermotolerance: decreased
- mitotic recombination: decreased
- oxidative stress resistance: increased
- petite-negative
- replicative lifespan: decreased
- resistance to chemicals: decreased
- resistance to chemicals: increased
- resistance to chemicals: normal
- respiratory growth: absent
- respiratory growth: decreased rate
- small molecule transport: decreased
- starvation resistance: decreased
- stress resistance: decreased
- utilization of carbon source: decreased
- utilization of carbon source: decreased rate
- utilization of nitrogen source: decreased rate
- vegetative growth: decreased rate
- viable
Large-scale Survey
Interaction
Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.
343 total interactions for 256 unique genes
Physical Interactions
- Affinity Capture-MS: 174
- Affinity Capture-RNA: 10
- Affinity Capture-Western: 9
- Co-fractionation: 1
- Co-purification: 6
- Cross-Linking-MS (XL-MS): 19
- Proximity Label-MS: 2
- Reconstituted Complex: 3
- Two-hybrid: 1
Genetic Interactions
- Dosage Rescue: 24
- Negative Genetic: 26
- Phenotypic Suppression: 1
- Positive Genetic: 15
- Synthetic Growth Defect: 13
- Synthetic Lethality: 10
- Synthetic Rescue: 29
Regulation
The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.
- Regulators
- 7
- Targets
- 0
Expression
Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.
Summary Paragraph
A summary of the locus, written by SGD Biocurators following a thorough review of the literature. Links to gene names and curated GO terms are included within the Summary Paragraphs.
Last Updated: 2000-12-28
Literature
All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.