MSB4 / YOL112W Overview
- Standard Name
- MSB4 1
- Systematic Name
- YOL112W
- SGD ID
- SGD:S000005472
- Feature Type
- ORF , Verified
- Description
- GTPase-activating protein of the Ras superfamily; acts primarily on Sec4p, localizes to the bud site and bud tip; msb3 msb4 double mutation causes defects in secretion and actin organization; similar to the TBC-domain Tre2 oncogene; MSB4 has a paralog, MSB3, that arose from the whole genome duplication; human homolog USP6NL can complement yeast msb3 msb4 double null mutant 2 3 4 6 7
- Name Description
- Multicopy Suppression of a Budding defect 1 5
- Paralog
- MSB3 6
- Comparative Info
-
Sequence
The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.
- Summary
- MSB4 has a paralog, MSB3, that arose from the whole genome duplication
Analyze Sequence
S288C only
BLASTN | BLASTP | Design Primers | Restriction Fragment Map | Restriction Fragment Sizes | Six-Frame Translation
S288C vs. other species
BLASTN vs. fungi | BLASTP at NCBI | BLASTP vs. fungi
S288C vs. other strains
Protein
Basic sequence-derived (length, molecular weight, isoelectric point) and experimentally-determined (median abundance, median absolute deviation) protein information. Click "Protein Details" for further information about the protein such as half-life, abundance, domains, domains shared with other proteins, protein sequence retrieval for various strains, physico-chemical properties, protein modification sites, and external identifiers for the protein.
- Length (a.a.)
- 492
- Mol. Weight (Da)
- 57083.3
- Isoelectric Point
- 5.16
- Median Abundance (molecules/cell)
- 1059 +/- 464
Alleles
Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.
View all MSB4 alleles in SGD search
Gene Ontology
GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.
- Summary
- GTPase activator involved in exocytosis and formin-nucleated actin cable assembly; localizes to incipient cellular bud site, bud tip and polarisome
View computational annotations
Molecular Function
- Manually Curated
- enables GTPase activator activity (IDA)
Biological Process
- Manually Curated
- involved in exocytosis (IGI)
- involved in formin-nucleated actin cable assembly (IGI, IPI)
Cellular Component
- Manually Curated
- located in cellular bud tip (IDA)
- located in incipient cellular bud site (IDA)
- located in mating projection tip (IDA)
- part of polarisome (IDA)
Complex
Macromolecular complex annotations are imported from the Complex Portal. These annotations have been derived from physical molecular interaction evidence extracted from the literature and cross-referenced in the entry, or by curator inference from information on homologs in closely related species or by inference from scientific background.
Phenotype
Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.
- Summary
- Non-essential gene; null mutant has lower innate thermotolerance; overexpression causes slow growth, defects in actin cytoskeleton and abnormalities in G2 phase of the cell cycle
Classical Genetics
- null
- overexpression
- unspecified
Large-scale Survey
Disease
Disease Annotations consist of three mandatory components: a gene product, a term from the Disease Ontology (DO) controlled vocabulary and an evidence code. SGD provides manually curated DO Annotations derived from the literature. Click "Disease Details" to view all Disease information and evidence for this locus as well as diseases it shares with other genes.
- Summary
- Yeast MSB4 is homologous to human USP6NL, and has been used to study Ewing sarcoma
Manually Curated
- Ewing sarcoma (ISS, IGI)
Interaction
Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.
- Summary
- The msb4 null mutant is viable; the null mutant of paralog msb3 is viable; the msb4 msb3 double mutant is viable but has a growth defect in some backgrounds.
259 total interactions for 218 unique genes
Physical Interactions
- Affinity Capture-MS: 1
- Affinity Capture-RNA: 5
- Biochemical Activity: 4
- PCA: 2
- Reconstituted Complex: 5
- Two-hybrid: 1
Genetic Interactions
- Dosage Growth Defect: 2
- Dosage Lethality: 5
- Dosage Rescue: 9
- Negative Genetic: 196
- Phenotypic Enhancement: 2
- Positive Genetic: 13
- Synthetic Growth Defect: 6
- Synthetic Lethality: 8
Regulation
The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.
- Regulators
- 6
- Targets
- 0
Expression
Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.
Literature
All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.