PHO13 / YDL236W Overview
- Standard Name
- PHO13
- Systematic Name
- YDL236W
- SGD ID
- SGD:S000002395
- Feature Type
- ORF , Verified
- Description
- Conserved phosphatase acting as a metabolite repair enzyme; shows specific dephosphorylating activity on two side-products of central carbohydrate metabolism, 2-phosphoglycolate and 4-phosphoerythronate; alkaline phosphatase specific for p-nitrophenyl phosphate; also has protein phosphatase activity; human ortholog PGP shows similar substrate specificity, deletion causes similar metabolite accumulation phenotypes, suggesting conserved role in eliminating glycolytic byproducts 1 2 3
- Name Description
- PHOsphate metabolism
- Comparative Info
-
Sequence
The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.
- Summary
- PHO13/YDL236W is located on the left arm of chromosome IV near the telomere between AIM6 and YPD1 phosphorelay intermediate sensor protein; coding sequence is 939 nucleotides long with 10 SNPs, one of which causes a Thr/Ala polymorphism at residue 306, and another that causes a premature stop in strain D273-10B at residue 311 which shortens the protein by a single amino acid
Analyze Sequence
S288C only
BLASTN | BLASTP | Design Primers | Restriction Fragment Map | Restriction Fragment Sizes | Six-Frame Translation
S288C vs. other species
BLASTN vs. fungi | BLASTP at NCBI | BLASTP vs. fungi
S288C vs. other strains
Protein
Basic sequence-derived (length, molecular weight, isoelectric point) and experimentally-determined (median abundance, median absolute deviation) protein information. Click "Protein Details" for further information about the protein such as half-life, abundance, domains, domains shared with other proteins, protein sequence retrieval for various strains, physico-chemical properties, protein modification sites, and external identifiers for the protein.
- Summary
- Pho13p is 312 amino acids long, of average half-life, low in abundance; shares domains with proteins involved in transport; phosphorylated on 9 residues
- Length (a.a.)
- 312
- Mol. Weight (Da)
- 34622.9
- Isoelectric Point
- 6.29
- Median Abundance (molecules/cell)
- 8772 +/- 2917
- Half-life (hr)
- 9.4
Alleles
Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.
View all PHO13 alleles in SGD search
Gene Ontology
GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.
- Summary
- Phosphatase with alkaline phosphatase, phosphoprotein phosphatase, and phosphoglycolate phosphatase activities; involved in carbohydrate dephosphorylation; localizes to the nucleus and cytoplasm
View computational annotations
Molecular Function
- Manually Curated
- enables alkaline phosphatase activity (IDA)
- enables phosphatase activity (IDA)
- enables phosphoglycolate phosphatase activity (IDA)
- enables phosphoprotein phosphatase activity (IDA)
Biological Process
- Manually Curated
- involved in carbohydrate metabolic process (IDA)
Phenotype
Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.
- Summary
- PHO13/YDL236W is a non-essential gene; null mutants are viable, utilize xylose more readily, show increased competitive fitness in minimal media and decreased competitive fitness in rich media, and have decreased resistance to alpha-synuclein
Classical Genetics
Interaction
Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.
- Summary
- Pho13p interacts physically with proteins involved in organelle assembly; PHO13 interacts genetically with genes involved in transcription
122 total interactions for 96 unique genes
Physical Interactions
- Affinity Capture-MS: 5
- Affinity Capture-RNA: 2
- Biochemical Activity: 4
- Co-purification: 1
- PCA: 4
- Proximity Label-MS: 2
- Reconstituted Complex: 1
- Two-hybrid: 1
Genetic Interactions
- Negative Genetic: 83
- Phenotypic Enhancement: 2
- Positive Genetic: 13
- Synthetic Growth Defect: 1
- Synthetic Rescue: 3
Regulation
The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.
- Regulators
- 4
- Targets
- 0
Expression
Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.
Summary Paragraph
A summary of the locus, written by SGD Biocurators following a thorough review of the literature. Links to gene names and curated GO terms are included within the Summary Paragraphs.
Last Updated: 2025-02-04
Literature
All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.