TFC1 / YBR123C Overview
- Standard Name
- TFC1 1 2
- Systematic Name
- YBR123C
- SGD ID
- SGD:S000000327
- Aliases
- tau 95 2
- Feature Type
- ORF , Verified
- Description
- Subunit of RNA polymerase III transcription initiation factor complex; one of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauA globular domain of TFIIIC that binds DNA at the BoxA promoter sites of tRNA and similar genes; human homolog is TFIIIC-63 3 4 5
- Name Description
- Transcription Factor class C 2
- Comparative Info
-
Sequence
The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.
Analyze Sequence
S288C only
BLASTN | BLASTP | Design Primers | Restriction Fragment Map | Restriction Fragment Sizes | Six-Frame Translation
S288C vs. other species
BLASTN vs. fungi | BLASTP at NCBI | BLASTP vs. fungi
S288C vs. other strains
Protein
Basic sequence-derived (length, molecular weight, isoelectric point) and experimentally-determined (median abundance, median absolute deviation) protein information. Click "Protein Details" for further information about the protein such as half-life, abundance, domains, domains shared with other proteins, protein sequence retrieval for various strains, physico-chemical properties, protein modification sites, and external identifiers for the protein.
- Summary
- Subunit of RNA polymerase III transcription initiation factor complex; part of the TauA globular domain of TFIIIC that binds DNA
- Length (a.a.)
- 649
- Mol. Weight (Da)
- 73535.1
- Isoelectric Point
- 5.02
- Median Abundance (molecules/cell)
- 2691 +/- 854
- Half-life (hr)
- 8.3
Alleles
Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.
View all TFC1 alleles in SGD search
Gene Ontology
GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.
- Summary
- Subunit of the transcription factor TFIIIC complex; involved in recruiting TFIIIB to chromatin for transcription of RNA genes by RNA polymerase III
View computational annotations
Molecular Function
- Manually Curated
- contributes to DNA binding, bending (IDA)
- contributes to RNA polymerase III type 1 promoter sequence-specific DNA binding (IDA)
- contributes to RNA polymerase III type 2 promoter sequence-specific DNA binding (IDA)
Biological Process
- Manually Curated
- involved in 5S class rRNA transcription by RNA polymerase III (IDA)
- involved in transcription by RNA polymerase III (IDA, IMP)
Cellular Component
- Manually Curated
- part of transcription factor TFIIIC complex (IDA)
Complex
Macromolecular complex annotations are imported from the Complex Portal. These annotations have been derived from physical molecular interaction evidence extracted from the literature and cross-referenced in the entry, or by curator inference from information on homologs in closely related species or by inference from scientific background.
Phenotype
Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.
Classical Genetics
- null
- unspecified
- conditional
Large-scale Survey
Interaction
Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.
297 total interactions for 210 unique genes
Physical Interactions
- Affinity Capture-MS: 41
- Affinity Capture-RNA: 1
- Affinity Capture-Western: 28
- Co-fractionation: 4
- Far Western: 1
- Reconstituted Complex: 1
- Two-hybrid: 5
Genetic Interactions
- Dosage Rescue: 3
- Negative Genetic: 189
- Positive Genetic: 21
- Synthetic Growth Defect: 1
- Synthetic Lethality: 1
- Synthetic Rescue: 1
Regulation
The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.
- Summary
- TFC1 encodes one of six subunits of RNA polymerase III (pol III) transcription factor TFIIIC, which is composed of Tfc1p, Tfc3p, Tfc4p, Tfc6p, Tfc7p, and Tfc8p. Genes that are transcribed by pol III, all encoding small RNAs such as tRNAs, 5S rRNA genes, and U6 spliceosomal RNA, contain two conserved promoter elements termed the A and B boxes. The A box is bound by the TA subcomplex of TFIIIC, and the B box is bound by the TB subcomplex. Tfc1p is part of the TA subcomplex of TFIIIC, along with Tfc4p and Tfc7p. Tfc1p is important for recognition of and binding to the A box, and is required for pol III start site selection. During pol III transcription initiation, TFIIIC first binds to DNA and then recruits the subunits of TFIIIB: Brf1p, Bdp1p, and Spt15p (also known as TATA-binding protein). The major role of TFIIIC is to facilitate the assembly of TFIIIB, which is a requirement for pol III transcription initiation. TFIIIC is also involved in transcription reinitiation by pol III, and its binding to chromatin may have a regulatory role in the determination of chromatin structure.
- Regulators
- 3
- Targets
- 0
Expression
Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.
Literature
All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.