BUD16 / YEL029C Overview
- Standard Name
- BUD16 1
- Systematic Name
- YEL029C
- SGD ID
- SGD:S000000755
- Feature Type
- ORF , Verified
- Description
- Putative pyridoxal kinase; a key enzyme involved in pyridoxal 5'-phosphate synthesis, the active form of vitamin B6; required for genome integrity; involved in bud-site selection; localizes to cytosol and peroxisomes; similarity to yeast BUD17 and human pyridoxal kinase (PDXK) 1 2 3 4 5
- Name Description
- BUD site selection 1
- Comparative Info
-
Sequence
The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.
Analyze Sequence
S288C only
BLASTN | BLASTP | Design Primers | Restriction Fragment Map | Restriction Fragment Sizes | Six-Frame Translation
S288C vs. other species
BLASTN vs. fungi | BLASTP at NCBI | BLASTP vs. fungi
S288C vs. other strains
Protein
Basic sequence-derived (length, molecular weight, isoelectric point) and experimentally-determined (median abundance, median absolute deviation) protein information. Click "Protein Details" for further information about the protein such as half-life, abundance, domains, domains shared with other proteins, protein sequence retrieval for various strains, physico-chemical properties, protein modification sites, and external identifiers for the protein.
- Length (a.a.)
- 312
- Mol. Weight (Da)
- 35556.5
- Isoelectric Point
- 6.51
- Median Abundance (molecules/cell)
- 1426 +/- 642
- Half-life (hr)
- 12.4
Alleles
Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.
View all BUD16 alleles in SGD search
Gene Ontology
GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.
- Summary
- Putative pyridoxal kinase involved in active vitamin B6 biosynthesis
View computational annotations
Molecular Function
- Manually Curated
- enables pyridoxal kinase activity (ISA)
Biological Process
- Manually Curated
- involved in pyridoxal phosphate biosynthetic process (IMP, IGI)
Cellular Component
- Manually Curated
- located in peroxisome (IDA)
Pathways
Phenotype
Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.
- Summary
- Non-essential gene; null mutant has elongated G1 phase and smaller cell size; null mutant shows increased frequency of gross chromosomal rearrangements and accumulates greatly decreased levels of pyridoxal 5'-phosphate; in large-scale studies, null mutant displays random budding pattern, decreased competitive fitness in a variety of media, instability of the mitochondrial genome, and altered resistance to a variety of chemicals
Classical Genetics
- null
- cell cycle progression in G1 phase: increased duration
- cell size: decreased
- chemical compound accumulation: decreased
- chromosome/plasmid maintenance: abnormal
- growth in exponential phase: decreased rate
- protein/peptide distribution: increased
- protein/peptide modification: increased
- resistance to chemicals: decreased
- null
- auxotrophy
- biofilm formation: decreased
- budding pattern: abnormal
- cell shape: abnormal
- cell size: increased
- chitin deposition: normal
- competitive fitness: decreased
- haploinsufficient
- heat sensitivity: increased
- hyperosmotic stress resistance: decreased
- metal resistance: decreased
- mitochondrial genome maintenance: absent
- oxidative stress resistance: decreased
- resistance to chemicals: decreased
- resistance to chemicals: increased
- respiratory growth: absent
- respiratory growth: decreased
- respiratory growth: decreased rate
- stress resistance: decreased
- telomere length: decreased
- toxin resistance: decreased
- utilization of nitrogen source: absent
- vacuolar morphology: abnormal
- vegetative growth: decreased
- vegetative growth: decreased rate
- viable
Large-scale Survey
Interaction
Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.
89 total interactions for 83 unique genes
Physical Interactions
- Affinity Capture-MS: 3
- Affinity Capture-RNA: 2
- Co-localization: 1
- Co-purification: 1
- Reconstituted Complex: 8
- Two-hybrid: 1
Genetic Interactions
- Negative Genetic: 48
- Phenotypic Enhancement: 2
- Phenotypic Suppression: 1
- Positive Genetic: 11
- Synthetic Growth Defect: 8
- Synthetic Lethality: 3
Regulation
The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.
- Regulators
- 2
- Targets
- 0
Expression
Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.
Literature
All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.