SNR7-L / YNCG0044C Overview
- Standard Name
- SNR7-L 1
- Systematic Name
- YNCG0044C
- SGD ID
- SGD:S000006495
- Aliases
- U5L 2 , SNR7 , snR7-L
- Feature Type
- snRNA gene
- Description
- U5 spliceosomal RNA (U5 snRNA), long form; associated with spliceosome
- Name Description
- Small Nuclear RNA
- RNAcentral ID
- URS000053F313
- Secondary Structure
-
- Comparative Info
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Sequence
The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.
Analyze Sequence
S288C only
BLASTN | Design Primers | Restriction Fragment Map | Restriction Fragment Sizes
S288C vs. other species
Gene Ontology
GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.
View computational annotations
Molecular Function
- Manually Curated
- enables pre-mRNA 5'-splice site binding (IDA)
- contributes to second spliceosomal transesterification activity (IMP)
Biological Process
- Manually Curated
- involved in alignment of 3' and 5' splice sites of mRNA (IMP)
- involved in generation of catalytic spliceosome for second transesterification step (IMP)
- involved in mRNA 5'-splice site recognition (IDA)
- involved in mRNA splicing, via spliceosome (IMP)
- involved in spliceosomal complex assembly (IDA)
Cellular Component
- Manually Curated
- part of U4/U6 x U5 tri-snRNP complex (IDA)
- part of U5 snRNP (IDA)
Complex
Macromolecular complex annotations are imported from the Complex Portal. These annotations have been derived from physical molecular interaction evidence extracted from the literature and cross-referenced in the entry, or by curator inference from information on homologs in closely related species or by inference from scientific background.
Phenotype
Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.
No phenotype data available.
Interaction
Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.
26 total interactions for 17 unique genes
Physical Interactions
- Affinity Capture-RNA: 12
- Affinity Capture-Western: 3
- Protein-RNA: 6
- Reconstituted Complex: 1
Genetic Interactions
- Synthetic Growth Defect: 1
- Synthetic Lethality: 3
Regulation
The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.
No regulation data available.
Literature
All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.