Reference: Strahm Y, et al. (1999) The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr 255p. EMBO J 18(20):5761-77

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Abstract


Gle1p is an essential, nuclear pore complex (NPC)-associated RNA export factor. In a screen for high copy suppressors of a GLE1 mutant strain, we identified the FG-nucleoporin Rip1p and the DEAD-box protein Rat8p/Dbp5p, both of which have roles in RNA export; we also found Ymr255p/Gfd1p, a novel inessential protein. All three high copy suppressors interact with the C-terminal domain of Gle1p; immunoelectron microscopy localizations indicate that Gle1p, Rip1p and Rat8p/Dbp5p are present on the NPC cytoplasmic fibrils; Rip1p was also found within the nucleoplasm and on the nuclear baskets. In vivo localizations support the hypothesis that Rip1p contributes to the association of Gle1p with the pore and that Gle1p, in turn, provides a binding site for Rat8p/Dbp5p at the NPC. These data are consistent with the view that Gle1p, Rip1p, Rat8p/Dbp5p and Ymr255p/Gfd1p associate on the cytoplasmic side of the NPC to act in a terminal step of RNA export. We also describe a human functional homologue of Rip1p, called hCG1, which rescues Rip1p function in yeast, consistent with the evolutionary conservation of this NPC-associated protein.

Reference Type
Comparative Study | Journal Article | Research Support, Non-U.S. Gov't
Authors
Strahm Y, Fahrenkrog B, Zenklusen D, Rychner E, Kantor J, Rosbach M, Stutz F
Primary Lit For
GLE1 | NUP42 | DBP5 | GFD1 | Nuclear pore complex

Gene Ontology Annotations


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Gene/Complex Qualifier Gene Ontology Term Aspect Annotation Extension Evidence Method Source Assigned On Reference

Interaction Annotations


Genetic Interactions

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Interactor Interactor Allele Assay Annotation Action Phenotype SGA score P-value Source Reference

Physical Interactions 9 entries for 5 genes

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InteractorInteractorAssayAnnotationActionModification
GLE1DBP5Reconstituted Complexmanually curatedBait-HitNo Modification
GLE1GFD1Reconstituted Complexmanually curatedBait-HitNo Modification
GLE1NUP42Reconstituted Complexmanually curatedBait-HitNo Modification
GLE1DBP5Two-hybridmanually curatedBait-HitNo Modification
GLE1GFD1Two-hybridmanually curatedBait-HitNo Modification
GLE1NUP42Two-hybridmanually curatedBait-HitNo Modification
GLE1NUP42Two-hybridmanually curatedHit-BaitNo Modification
NUP42CRM1Two-hybridmanually curatedHit-BaitNo Modification
NUP42GFD1Two-hybridmanually curatedBait-HitNo Modification
Showing 1 to 9 of 9 entries

Functional Complementation Annotations 1 entry for 1 complement


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GeneSpeciesGene IDStrain backgroundDirectionDetailsSource
NUP42Homo sapiensHGNC:17010S288Cother complements yeastHuman NUP42 (C-terminal domain) rescues the heat shock RNA export defect of the S. cerevisiae null allele, and the synthetic lethality of a gle1-8 nup42 double mutant.SGD
Showing 1 to 1 of 1 entries