One major goal of biology is to provide a quantitative description of cellular physiology. This task is complicated by population effects, which perturb culture conditions and mask the behavior of the individual cell. To overcome these limitations, the construction and operation of a microfluidic bioreactor is presented. The new reactor concept guarantees constant environmental conditions and single cell resolution, thus it was named Envirostat (environment, constant). In the Envirostat, cells are contactless trapped by negative dielectrophoresis (nDEP) and cultivated in a constant medium flow. To control chip temperature, a Peltier device was constructed. Joule heating by nDEP was quantified with Rhodamine B in dependence of applied voltage, field mode, medium conductivity, and flow velocity. The integration of the Joule heating effect in the temperature control allowed setting and maintaining the cultivation temperature. For single cell cultivation of Saccharomyces cerevisiae, medium composition changes below 0.001% were estimated by computational fluid dynamic simulation. These changes were considered not to influence cell physiology. Finally, single S. cerevisiae cells were cultivated for more than four generations in the Envirostat, thus showing the applicability of the new reactor concept. The Envirostat facilitates single cell research and might simplify the investigation of hitherto difficult to access biological phenomena such as the true regulatory and physiological response to genetic and environmental perturbations.
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Evidence ID | Analyze ID | Gene/Complex | Systematic Name/Complex Accession | Qualifier | Gene Ontology Term ID | Gene Ontology Term | Aspect | Annotation Extension | Evidence | Method | Source | Assigned On | Reference |
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Evidence ID | Analyze ID | Gene | Gene Systematic Name | Phenotype | Experiment Type | Experiment Type Category | Mutant Information | Strain Background | Chemical | Details | Reference |
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Evidence ID | Analyze ID | Gene | Gene Systematic Name | Disease Ontology Term | Disease Ontology Term ID | Qualifier | Evidence | Method | Source | Assigned On | Reference |
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Evidence ID | Analyze ID | Regulator | Regulator Systematic Name | Target | Target Systematic Name | Direction | Regulation of | Happens During | Regulator Type | Direction | Regulation Of | Happens During | Method | Evidence | Strain Background | Reference |
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Site | Modification | Modifier | Source | Reference |
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Evidence ID | Analyze ID | Interactor | Interactor Systematic Name | Interactor | Interactor Systematic Name | Allele | Assay | Annotation | Action | Phenotype | SGA score | P-value | Source | Reference | Note |
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Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details about experiment type and any other genes involved in the interaction.
Evidence ID | Analyze ID | Interactor | Interactor Systematic Name | Interactor | Interactor Systematic Name | Assay | Annotation | Action | Modification | Source | Reference | Note |
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Complement ID | Locus ID | Gene | Species | Gene ID | Strain background | Direction | Details | Source | Reference |
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Evidence ID | Analyze ID | Dataset | Description | Keywords | Number of Conditions | Reference |
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