Reference: Menssen R, et al. (2012)
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Abstract
In the yeast Saccharomyces cerevisiae, key regulatory enzymes of gluconeogenesis such as fructose-1,6-bisphosphatase are degraded via the ubiquitin proteasome system when cells are replenished with glucose. Polyubiquitination is carried out by the Gid complex, a multisubunit ubiquitin ligase that consists of seven different Gid (glucose-induced degradation-deficient) proteins. Under gluconeogenic conditions the E3 ligase is composed of six subunits (Gid1/Vid30, Gid2/Rmd5, Gid5/Vid28, Gid7, Gid8, and Gid9/Fyv10). Upon the addition of glucose the regulatory subunit Gid4/Vid24 appears, binds to the Gid complex, and triggers ubiquitination of fructose-1,6-bisphosphatase. All seven proteins are essential for this process; however, nothing is known about the arrangement of the subunits in the complex. Interestingly, each Gid protein possesses several remarkable motifs (e.g. SPRY, LisH, CTLH domains) that may play a role in protein-protein interaction. We, therefore, generated altered versions of individual Gid proteins by deleting or mutating these domains and performed co-immunoprecipitation experiments to analyze the interaction between distinct subunits. Thus, we were able to create an initial model of the topology of this unusual E3 ubiquitin ligase.
- Reference Type
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Journal Article |
Research Support, Non-U.S. Gov't
- Authors
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Menssen R,
Schweiggert J,
Schreiner J,
Kusevic D,
Reuther J,
Braun B,
Wolf DH
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- VID30 | VID28 | VID24 | RMD5 | FYV10 | GID7 | GID8 | GID E3 ubiquitin ligase complex, GID4 variant | GID E3 ubiquitin ligase complex, GID10 variant | GID E3 ubiquitin ligase complex, GID11 variant
Gene Ontology Annotations
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Evidence ID |
Analyze ID |
Gene/Complex |
Systematic Name/Complex Accession |
Qualifier |
Gene Ontology Term ID |
Gene Ontology Term |
Aspect |
Annotation Extension |
Evidence |
Method |
Source |
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Reference |
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Evidence ID |
Analyze ID |
Gene |
Gene Systematic Name |
Phenotype |
Experiment Type |
Experiment Type Category |
Mutant Information |
Strain Background |
Chemical |
Details |
Reference |
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Evidence ID |
Analyze ID |
Gene |
Gene Systematic Name |
Disease Ontology Term |
Disease Ontology Term ID |
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Reference |
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Evidence ID |
Analyze ID |
Regulator |
Regulator Systematic Name |
Target |
Target Systematic Name |
Direction |
Regulation of |
Happens During |
Regulator Type |
Direction |
Regulation Of |
Happens During |
Method |
Evidence |
Strain Background |
Reference |
Post-translational Modifications
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Genetic Interactions
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Evidence ID |
Analyze ID |
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Interactor |
Interactor Systematic Name |
Interactor |
Interactor Systematic Name |
Allele |
Assay |
Annotation |
Action |
Phenotype |
SGA score |
P-value |
Source |
Reference |
Note |
Physical Interactions
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| Interactor | Interactor | Assay | Annotation | Action | Modification |
| FYV10 | VID30 | Affinity Capture-Western | manually curated | Hit-Bait | No Modification |
| GID7 | VID30 | Affinity Capture-Western | manually curated | Hit-Bait | No Modification |
| RMD5 | VID30 | Affinity Capture-Western | manually curated | Bait-Hit | No Modification |
| RMD5 | VID30 | Affinity Capture-Western | manually curated | Hit-Bait | No Modification |
| VID24 | VID30 | Affinity Capture-Western | manually curated | Hit-Bait | No Modification |
| VID24 | VID28 | Affinity Capture-Western | manually curated | Bait-Hit | No Modification |
| VID28 | VID30 | Affinity Capture-Western | manually curated | Hit-Bait | No Modification |
| VID30 | GID8 | Affinity Capture-Western | manually curated | Bait-Hit | No Modification |
Functional Complementation Annotations
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Complement ID |
Locus ID |
Gene |
Species |
Gene ID |
Strain background |
Direction |
Details |
Source |
Reference |