Overflow metabolism refers to the widespread phenomenon of cells excreting metabolic by-products into their environment. Although overflow is observed in virtually all living organisms, it has been studied independently and given different names in different species. This review highlights emerging evidence that overflow metabolism is governed by common principles in prokaryotic and eukaryotic organisms. We examine the similarities and specificities in the structure, function, and regulation of overflow pathways in bacterial, yeast, and mammalian cells, with a focus on model species and common by-products. Our reinterpretation of previous findings points to the existence of universal principles governing overflow fluxes. We also emphasize the need to reconsider the roles of overflow metabolites, not as cellular stress-inducing toxic waste, but as nutrients and regulators, influencing metabolism at both cellular and community levels, often to the benefit of the producing cells. Finally, we review prevailing theories of overflow metabolism and explore avenues toward a potential unified theory of overflow. This review offers fundamental insights into this widespread metabolic process and proposes a conceptual foundation for future research.
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Evidence ID | Analyze ID | Gene/Complex | Systematic Name/Complex Accession | Qualifier | Gene Ontology Term ID | Gene Ontology Term | Aspect | Annotation Extension | Evidence | Method | Source | Assigned On | Reference |
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Evidence ID | Analyze ID | Gene | Gene Systematic Name | Phenotype | Experiment Type | Experiment Type Category | Mutant Information | Strain Background | Chemical | Details | Reference |
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Evidence ID | Analyze ID | Gene | Gene Systematic Name | Disease Ontology Term | Disease Ontology Term ID | Qualifier | Evidence | Method | Source | Assigned On | Reference |
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Evidence ID | Analyze ID | Regulator | Regulator Systematic Name | Target | Target Systematic Name | Direction | Regulation of | Happens During | Regulator Type | Direction | Regulation Of | Happens During | Method | Evidence | Strain Background | Reference |
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Site | Modification | Modifier | Source | Reference |
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Evidence ID | Analyze ID | Interactor | Interactor Systematic Name | Interactor | Interactor Systematic Name | Allele | Assay | Annotation | Action | Phenotype | SGA score | P-value | Source | Reference | Note |
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Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details about experiment type and any other genes involved in the interaction.
Evidence ID | Analyze ID | Interactor | Interactor Systematic Name | Interactor | Interactor Systematic Name | Assay | Annotation | Action | Modification | Source | Reference | Note |
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Complement ID | Locus ID | Gene | Species | Gene ID | Strain background | Direction | Details | Source | Reference |
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Evidence ID | Analyze ID | Dataset | Description | Keywords | Number of Conditions | Reference |
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