Gene expression is typically studied on a gene-by-gene basis, with regulation analyzed primarily in response to environmental or developmental cues. In contrast, much less is known about how intrinsic factors, such as cell size or DNA content, influence global gene expression patterns. Cell size varies significantly across different cell types and dynamically changes during the cell cycle. To maintain proper intracellular concentrations of biomolecules such as mRNAs and proteins, gene expression must be coordinated with cell size. Emerging evidence from diverse organisms, including bacteria, yeast, animals, and plants, demonstrates that transcriptional output scales with cell size, suggesting a conserved principle of gene regulation. However, the mechanisms by which cells sense their size and modulate gene expression accordingly remain poorly understood. In this review, we summarize recent advances in uncovering the molecular and cellular principles of gene expression scaling with cell size across kingdoms. We also highlight key open questions in the field, with a particular emphasis on how plant systems, still underexplored in this context, can provide additional insights into the fundamental principles of size-dependent gene regulation.
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| Evidence ID | Analyze ID | Gene/Complex | Systematic Name/Complex Accession | Qualifier | Gene Ontology Term ID | Gene Ontology Term | Aspect | Annotation Extension | Evidence | Method | Source | Assigned On | Reference |
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| Evidence ID | Analyze ID | Gene | Gene Systematic Name | Phenotype | Experiment Type | Experiment Type Category | Mutant Information | Strain Background | Chemical | Details | Reference |
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| Evidence ID | Analyze ID | Gene | Gene Systematic Name | Disease Ontology Term | Disease Ontology Term ID | Qualifier | Evidence | Method | Source | Assigned On | Reference |
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| Evidence ID | Analyze ID | Regulator | Regulator Systematic Name | Target | Target Systematic Name | Direction | Regulation of | Happens During | Regulator Type | Direction | Regulation Of | Happens During | Method | Evidence | Strain Background | Reference |
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| Site | Modification | Modifier | Source | Reference |
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| Evidence ID | Analyze ID | Interactor | Interactor Systematic Name | Interactor | Interactor Systematic Name | Allele | Assay | Annotation | Action | Phenotype | SGA score | P-value | Source | Reference | Note |
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Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details about experiment type and any other genes involved in the interaction.
| Evidence ID | Analyze ID | Interactor | Interactor Systematic Name | Interactor | Interactor Systematic Name | Assay | Annotation | Action | Modification | Source | Reference | Note |
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| Complement ID | Locus ID | Gene | Species | Gene ID | Strain background | Direction | Details | Source | Reference |
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| Evidence ID | Analyze ID | Dataset | Description | Keywords | Number of Conditions | Reference |
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