Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided.
4 entries for 2 phenotypesIncrease the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.
| Gene | Phenotype | Experiment Type | Mutant Information | Strain Background | Chemical | Details | Reference |
|---|---|---|---|---|---|---|---|
| RAD50 | resistance to chemicals: decreased | classical genetics | conditional Allele: rad50-E1042Δ C-terminal coiled-coil domain mutated; predicted to cause a break in the heptad repeat of the coiled-coil domain; analogous to human RAD50 separation-of-function disease variant p.Glu1035del (E1035Δ) | W303 | 50 mM hydroxyurea | Temperature: elevated temperature, 37 °C Details: highly sensitive to hydroxyurea at elevated but not permissive temperature | Chansel-Da Cruz M, et al. (2020) PMID:33378670 |
| RAD50 | resistance to chemicals: decreased | classical genetics | conditional Allele: rad50-E1042Δ C-terminal coiled-coil domain mutated; predicted to cause a break in the heptad repeat of the coiled-coil domain; analogous to human RAD50 separation-of-function disease variant p.Glu1035del (E1035Δ) | W303 | 10 μM camptothecin | Temperature: elevated temperature, 37 °C Details: highly sensitive to camptothecin at elevated but not permissive temperature | Chansel-Da Cruz M, et al. (2020) PMID:33378670 |
| RAD50 | resistance to chemicals: decreased | classical genetics | conditional Allele: rad50-E1042Δ C-terminal coiled-coil domain mutated; predicted to cause a break in the heptad repeat of the coiled-coil domain; analogous to human RAD50 separation-of-function disease variant p.Glu1035del (E1035Δ) | W303 | 0.010% methyl methanesulfonate | Temperature: elevated temperature, 37 °C Details: highly sensitive to MMS at elevated but not permissive temperature | Chansel-Da Cruz M, et al. (2020) PMID:33378670 |
| RAD50 | telomere length: decreased | classical genetics | conditional Allele: rad50-E1042Δ C-terminal coiled-coil domain mutated; predicted to cause a break in the heptad repeat of the coiled-coil domain; analogous to human RAD50 separation-of-function disease variant p.Glu1035del (E1035Δ) | W303 | Temperature: elevated temperature, 37 °C Details: exhibits shorter telomeres at elevated temperature and to a lesser extent at permissive temperature | Chansel-Da Cruz M, et al. (2020) PMID:33378670 |
This diagram displays up to the top 30 positive interactions (green), negative interactions (orange), and phenotypes (blue) that are shared between the given allele (black) and other alleles (purple). The shared interactions or phenotypes can be visualized separately using the radio button at the bottom of the graph.
List of references used specifically to curate the information in Overview section.
Addgene Plasmids | DNASU Plasmids | PlasmID | Thermo Scientific | YGRC
dHITS | FitDB | HIPHOP Chemogenomics | HIP HOP Profiles | MetaboGeneCard | PROPHECY | SCMD | ScreenTroll | TheCellVision | Yeast Phenome
BioGRID | CYC2008 | DIP | GeneMANIA | IMP | InterologFinder | ModelArchive | TheCellMap | YeastRC Two-Hybrid