Primary Literature
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- Zhang Y, et al. (2023) Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme. Cell Res 33(12):971-974 PMID: 37845487
- López-Rivera F, et al. (2022) Suppressor mutations that make the essential transcription factor Spn1/Iws1 dispensable in Saccharomyces cerevisiae. Genetics 222(2) PMID: 35977387
- Kim JH, et al. (2020) NuA3 HAT antagonizes the Rpd3S and Rpd3L HDACs to optimize mRNA and lncRNA expression dynamics. Nucleic Acids Res 48(19):10753-10767 PMID: 33010166
- Ha SD, et al. (2019) Transcription-dependent targeting of Hda1C to hyperactive genes mediates H4-specific deacetylation in yeast. Nat Commun 10(1):4270 PMID: 31537788
- Tomimoto K, et al. (2019) Histone deacetylases in sake yeast affect fermentation characteristics. Biosci Biotechnol Biochem 83(8):1498-1505 PMID: 30355069
- Lee KY, et al. (2018) Combinatorial Genetic Control of Rpd3S Through Histone H3K4 and H3K36 Methylation in Budding Yeast. G3 (Bethesda) 8(11):3411-3420 PMID: 30158320
- Lee S, et al. (2018) Dot1 regulates nucleosome dynamics by its inherent histone chaperone activity in yeast. Nat Commun 9(1):240 PMID: 29339748
- Woo H, et al. (2017) Modulation of gene expression dynamics by co-transcriptional histone methylations. Exp Mol Med 49(4):e326 PMID: 28450734
- Kim JH, et al. (2016) Modulation of mRNA and lncRNA expression dynamics by the Set2-Rpd3S pathway. Nat Commun 7:13534 PMID: 27892458
- Ruan C, et al. (2016) Homodimeric PHD Domain-containing Rco1 Subunit Constitutes a Critical Interaction Hub within the Rpd3S Histone Deacetylase Complex. J Biol Chem 291(10):5428-38 PMID: 26747610
- Suzuki S, et al. (2016) Histone H3K36 trimethylation is essential for multiple silencing mechanisms in fission yeast. Nucleic Acids Res 44(9):4147-62 PMID: 26792892
- Chabbert CD, et al. (2015) A high-throughput ChIP-Seq for large-scale chromatin studies. Mol Syst Biol 11(1):777 PMID: 25583149
- Lee CH, et al. (2013) Chromatin remodelers fine-tune H3K36me-directed deacetylation of neighbor nucleosomes by Rpd3S. Mol Cell 52(2):255-63 PMID: 24055344
- Yeheskely-Hayon D, et al. (2013) The roles of the catalytic and noncatalytic activities of Rpd3L and Rpd3S in the regulation of gene transcription in yeast. PLoS One 8(12):e85088 PMID: 24358376
- Chen XF, et al. (2012) The Rpd3 core complex is a chromatin stabilization module. Curr Biol 22(1):56-63 PMID: 22177115
- Kim T, et al. (2012) Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics. Cell 150(6):1158-69 PMID: 22959268
- Poschke H, et al. (2012) Rif2 promotes a telomere fold-back structure through Rpd3L recruitment in budding yeast. PLoS Genet 8(9):e1002960 PMID: 23028367
- Venkatesh S, et al. (2012) Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes. Nature 489(7416):452-5 PMID: 22914091
- Churchman LS and Weissman JS (2011) Nascent transcript sequencing visualizes transcription at nucleotide resolution. Nature 469(7330):368-73 PMID: 21248844
- Stevens JR, et al. (2011) FACT, the Bur kinase pathway, and the histone co-repressor HirC have overlapping nucleosome-related roles in yeast transcription elongation. PLoS One 6(10):e25644 PMID: 22022426
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- Drouin S, et al. (2010) DSIF and RNA polymerase II CTD phosphorylation coordinate the recruitment of Rpd3S to actively transcribed genes. PLoS Genet 6(10):e1001173 PMID: 21060864
- Du HN and Briggs SD (2010) A nucleosome surface formed by histone H4, H2A, and H3 residues is needed for proper histone H3 Lys36 methylation, histone acetylation, and repression of cryptic transcription. J Biol Chem 285(15):11704-13 PMID: 20139424
- Pattenden SG, et al. (2010) Features of cryptic promoters and their varied reliance on bromodomain-containing factors. PLoS One 5(9):e12927 PMID: 20886085
- Quan TK and Hartzog GA (2010) Histone H3K4 and K36 methylation, Chd1 and Rpd3S oppose the functions of Saccharomyces cerevisiae Spt4-Spt5 in transcription. Genetics 184(2):321-34 PMID: 19948887
- Knott SR, et al. (2009) Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae. Genes Dev 23(9):1077-90 PMID: 19417103
- Houseley J, et al. (2008) A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster. Mol Cell 32(5):685-95 PMID: 19061643
- Sun B, et al. (2008) Molecular basis of the interaction of Saccharomyces cerevisiae Eaf3 chromo domain with methylated H3K36. J Biol Chem 283(52):36504-12 PMID: 18984594
- Xu C, et al. (2008) Structural basis for the recognition of methylated histone H3K36 by the Eaf3 subunit of histone deacetylase complex Rpd3S. Structure 16(11):1740-50 PMID: 18818090
- Lee JS and Shilatifard A (2007) A site to remember: H3K36 methylation a mark for histone deacetylation. Mutat Res 618(1-2):130-4 PMID: 17346757
- Li B, et al. (2007) Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription. Genes Dev 21(11):1422-30 PMID: 17545470
- Li B, et al. (2007) Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin. Science 316(5827):1050-4 PMID: 17510366
- Tompa R and Madhani HD (2007) Histone H3 lysine 36 methylation antagonizes silencing in Saccharomyces cerevisiae independently of the Rpd3S histone deacetylase complex. Genetics 175(2):585-93 PMID: 17179083
- Florens L, et al. (2006) Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors. Methods 40(4):303-11 PMID: 17101441
- Carrozza MJ, et al. (2005) Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell 123(4):581-92 PMID: 16286007
- Carrozza MJ, et al. (2005) Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex. Biochim Biophys Acta 1731(2):77-87; discussion 75-6 PMID: 16314178
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