Phenotype Help

TRM7 / YBR061C Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided.


Summary
Non-essential gene; null mutant is sensitive to H2O2; trm7-A26P disease-analogous mutation causes reduced 2'-O-methylation of the anticodon loop of tRNA-Phe; in large-scale studies, the null mutant displays shorter chronological lifespan, decreased competitive fitness, poor growth on galactose, increased transposition of transposable elements, and altered resistance to a variety of chemicals

Annotations

A phenotype is defined as an observable (e.g., apoptosis) and a qualifier (e.g., increased). There may be more than one row with the same phenotype if that phenotype was observed in separate studies or in different conditions, strains, alleles, etc.

38 entries for 19 phenotypes


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.

PhenotypeExperiment TypeMutant InformationStrain BackgroundChemicalDetailsReference
cell death: increased
classical genetics null
Allele: trm7-Δ
S288C80 mM acetic acidDetails: increased percentage of non-viable cells after acute exposure to acetic acid induced oxidative stress
Endres L, et al. (2020) PMID:32053677
cell death: increased
classical genetics null
Allele: trm7-Δ
S288C40 mM hydrogen peroxideDetails: increased percentage of non-viable cells after acute exposure to hydrogen peroxide induced oxidative stress
Endres L, et al. (2020) PMID:32053677
cell death: increased
classical genetics null
Allele: trm7-Δ
S288C400 μM rotenoneDetails: increased percentage of non-viable cells after acute exposure to rotenone induced oxidative stress
Endres L, et al. (2020) PMID:32053677
chemical compound accumulation: abnormal
systematic mutation setnull
Allele: trm7-Δ
S288C alpha-amino acidDetails: Significantly altered free amino acid profile (X^2- test adjusted p < 0.01), showing 2 simultaneous amino acid changes (Z-test, adjusted p < 0.01)
Mülleder M, et al. (2016) PMID:27693354
chemical compound accumulation: increased
systematic mutation setnull
Allele: trm7-Δ
S288C tyrosineMülleder M, et al. (2016) PMID:27693354
chemical compound accumulation: increased
systematic mutation setnull
Allele: trm7-Δ
S288C arginineMülleder M, et al. (2016) PMID:27693354
chemical compound accumulation: increased
classical genetics null
Allele: trm7-Δ
S288C reactive oxygen speciesDetails: elevated levels of intracellular reactive oxygen species
Endres L, et al. (2020) PMID:32053677
chronological lifespan: decreased
competitive growth

competitive survival of mixed stationary phase co-cultures

null
Allele: trm7-Δ
S288CGaray E, et al. (2014) PMID:24586198
chronological lifespan: increased
systematic mutation set null
Allele: trm7-Δ
S288CCampos SE, et al. (2018) PMID:29575540
competitive fitness: decreased
competitive growth

fitness profiling using complete deletion alleles

null
Allele: trm7-Δ
S288CMedia: minimal medium
Details: Relative fitness score: 0.965
Breslow DK, et al. (2008) PMID:18622397
Showing 1 to 10 of 38 entries

Shared Phenotypes

This diagram displays phenotype observables (purple squares) that are shared between the given gene (yellow circle) and other genes (gray circles) based on the number of phenotype observables shared (adjustable using the slider at the bottom).


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