Phenotype Help

HIS7 / YBR248C Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided.



Annotations

A phenotype is defined as an observable (e.g., apoptosis) and a qualifier (e.g., increased). There may be more than one row with the same phenotype if that phenotype was observed in separate studies or in different conditions, strains, alleles, etc.

20 entries for 15 phenotypes


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.

PhenotypeExperiment TypeMutant InformationStrain BackgroundChemicalDetailsReference
auxotrophy
classical geneticsnull
Allele: his7-Δ
Other histidineKuenzler M, et al. (1993) PMID:8366040
chemical compound accumulation: increased
homozygous diploid, systematic mutation set

glycogen accumulation in diploid mutant strains grown in microtiter plates

null
Allele: his7-Δ
S288C glycogenWilson WA, et al. (2002) PMID:12096123
chemical compound accumulation: increased
classical geneticsunspecifiedOther 1-(phosphoribosyl)imidazolecarboxamideDetails: indicative of a defect in histidine biosynthesis
FINK GR (1964) PMID:14190241
competitive fitness: increased
systematic mutation setnull
Allele: his7-Δ
S288CMedia: synthetic complete medium, SC
Qian W, et al. (2012) PMID:23103169
endocytosis: decreased
systematic mutation setnull
Allele: his7-Δ
S288CDetails: defective internalization of a chimeric Snc1p reporter, GFP-Snc1-Suc2
Burston HE, et al. (2009) PMID:19506040
haploproficient
heterozygous diploid, competitive growth

genome-wide fitness profiling

null
Allele: his7-Δ
S288CMedia: turbidostat growth in FPM medium
Details: Relative growth score: 0.0046
Pir P, et al. (2012) PMID:22244311
heat sensitivity: increased
homozygous diploid, systematic mutation set

pooled screening for fitness defects at 37 deg C relative to 30 deg C

null
Allele: his7-Δ
S288CTemperature: elevated temperature, 37 °C
Sinha H, et al. (2008) PMID:18780730
metal resistance: decreased
classical geneticsunspecifiedOther2.4 mM copper(II) sulfateDetails: also sensitive to cobalt and nickel; sensitivity affected by pH
Pearce DA and Sherman F (1999) PMID:10438744
mitotic recombination: decreased
systematic mutation set null
Allele: his7-Δ
S288CDetails: spontaneous direct-repeat hypo-recombination identified using a high-throughput replica-pinning technique; recombination frequency of less than 33% compared to 56% for wt
Novarina D, et al. (2020) PMID:32265288
oxidative stress resistance: increased
competitive growth null
Allele: his7-Δ
S288C1 mM paraquatHelsen J, et al. (2020) PMID:32658971
Showing 1 to 10 of 20 entries

Shared Phenotypes

This diagram displays phenotype observables (purple squares) that are shared between the given gene (yellow circle) and other genes (gray circles) based on the number of phenotype observables shared (adjustable using the slider at the bottom).


Reset

Click on a gene or phenotype observable name to go to its specific page within SGD; drag any of the gene or observable objects around within the visualization for easier viewing; click “Reset” to automatically redraw the diagram; filter the genes that share observable terms with the given gene by the number of terms they share by clicking anywhere on the slider bar or dragging the tab to the desired filter number.


Resources