Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Datasets are assigned one or more categories to facilitate grouping, filtering and browsing. Expression data are derived from records contained in the Gene Expression Omnibus, and are first log2 transformed and normalized. The PCL files generated for each dataset are used to populate the expression analysis tool SPELL.
No expression data for YFL040W.
View genes with similar expression profiles using SPELL (Serial Pattern of Expression Levels Locator).
Datasets are used to populate the expression analysis tool SPELL and may contain data for more than one unique experimental condition. All data is log2 transformed and normalized, and the files are provided in PCL format. Short descriptions of the experimental focus are provided, as are categories, assigned based on the area(s) of biology investigated and used in SPELL to group and filter like data. The number of unique experimental conditions are indicated and all datasets are referenced.
128 datasets for 98 referencesIncrease the total number of rows displayed on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; download this table as a .txt file using the Download button;
| Dataset | Description | Keywords | Number of Conditions | Reference |
|---|---|---|---|---|
| A Nested Parallel Experiment Demonstrates Differences in Intensity-Dependence Between RNA-Seq and Microarrays | We carried out a parallel nested experiment performed simultaneously on RNA-Seq and microarrays that systematically split variation into four stages (treatment, biological variation, library preparation, and chip/lane noise), allowing a separation and comparison of the sources of variation in a well-controlled cellular system, Saccharomyces cerevisiae. | bioinformatics and computational biology | 16 | Robinson DG, et al. (2015) PMID:26130709 |
| A Quantitative, High-Throughput Reverse Genetic Screen Reveals Novel Connections Between pre-mRNA Splicing and 5__ and 3__ end Transcript Determinants | The coding portions of most eukaryotic genes are interrupted by non-coding regions termed introns that must be excised prior to their translation | mRNA processing | 64 | Albulescu LO, et al. (2012) PMID:22479188 |
| abf1-1 mutant at 36C | abf1-1 mutant and wt cells grown at 30C, raised to 36C for 45 min | transcription | 4 | Miyake T, et al. (2004) PMID:15192094 |
| Acquisition of the ability to assimilate mannitol by Saccharomyces cerevisiae through dysfunction of Tup1-Cyc8, a general corepressor | Saccharomyces cerevisiae normally cannot assimilate mannitol, a promising brown macroalgal carbon source for bioethanol production | carbon utilization | 4 | Chujo M, et al. (2015) PMID:25304510 |
| Aging in yeast | wt & sgs1 null, w/ or w/o MMS (DNA damaging agent) | DNA damage stimulus, stress | 8 | Fry RC, et al. (2003) PMID:12875747 |
| Cell cycle, alpha-factor block-release | Culture synchronized by alpha factor arrest, then samples taken every 7 minutes as cells went through cell cycle. | mitotic cell cycle | 16 | Spellman PT, et al. (1998) PMID:9843569 |
| Cell cycle, cdc15 block-release | Culture synchronized in telophase by arrest of cdc15 temperature-sensitive mutant | mitotic cell cycle | 25 | Spellman PT, et al. (1998) PMID:9843569 |
| Cell cycle, elutriation | Culture synchronized by elutriation and samples removed at several time points up to 6.5 h. | mitotic cell cycle | 14 | Spellman PT, et al. (1998) PMID:9843569 |
| Chitin synthesis | wt and fks1 mutant exposed to chitin-inducing glucosamine for 2-hours or continuous steady state | cell wall organization, chemical stimulus, stress | 11 | Bulik DA, et al. (2003) PMID:14555471 |
| Comparative transcriptomic analysis between a high and a low sulfite producers wine yeast strains | The goal of this study was to compare the expression level of the whole genome of two wine yeast strains highly differing in their sulfite production (High producer strain: 10281A; Low producer strain: 1764A) | fermentation, sulfur utilization | 2 | Noble J, et al. (2015) PMID:25947166 |