RGM1 / YMR182C Overview
- Standard Name
- RGM1 1
- Systematic Name
- YMR182C
- SGD ID
- SGD:S000004794
- Feature Type
- ORF , Verified
- Description
- Putative zinc finger DNA binding transcription factor; contains two N-terminal C2H2 zinc fingers and C-terminal proline rich domain; overproduction impairs cell growth and induces expression of genes involved in monosaccharide catabolism and aldehyde metabolism; regulates expression of of Y' telomeric elements and subtelomeric COS genes; relocalizes to the cytosol in response to hypoxia; RGM1 has a paralog, USV1, that arose from the whole genome duplication 1 2 3 4 5 6 7 8
- Paralog
- USV1 7
- Comparative Info
-
Sequence
The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.
- Summary
- RGM1 has a paralog, USV1, that arose from the whole genome duplication
Analyze Sequence
S288C only
BLASTN | BLASTP | Design Primers | Restriction Fragment Map | Restriction Fragment Sizes | Six-Frame Translation
S288C vs. other species
BLASTN vs. fungi | BLASTP at NCBI | BLASTP vs. fungi
S288C vs. other strains
Protein
Basic sequence-derived (length, molecular weight, isoelectric point) and experimentally-determined (median abundance, median absolute deviation) protein information. Click "Protein Details" for further information about the protein such as half-life, abundance, domains, domains shared with other proteins, protein sequence retrieval for various strains, physico-chemical properties, protein modification sites, and external identifiers for the protein.
- Summary
- Relocalizes to the cytosol in response to hypoxia
- Length (a.a.)
- 211
- Mol. Weight (Da)
- 23865.6
- Isoelectric Point
- 10.01
- Median Abundance (molecules/cell)
- 1601 +/- 969
Alleles
Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.
View all RGM1 alleles in SGD search
Gene Ontology
GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.
- Summary
- Putative sequence-specific DNA binding RNA polymerase II transcription factor; involved in positive regulation of transcription by RNA polymerase II; localized to nucleus and cytosol
View computational annotations
Molecular Function
- Manually Curated
- enables DNA-binding transcription factor activity, RNA polymerase II-specific (ISS)
- enables zinc ion binding (RCA)
Biological Process
- Manually Curated
- involved in positive regulation of transcription by RNA polymerase II (IMP)
Phenotype
Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.
Classical Genetics
- overexpression
- null
- null
- overexpression
- unspecified
Large-scale Survey
Interaction
Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.
- Summary
- The rgm1 null mutant is viable; the null mutant of paralog usv1 is viable; the rgm1 usv1 double mutant has not been annotated for phenotype.
67 total interactions for 60 unique genes
Physical Interactions
- Affinity Capture-RNA: 4
- Biochemical Activity: 2
- Co-localization: 1
- Protein-peptide: 1
- Protein-RNA: 1
- Reconstituted Complex: 1
- Two-hybrid: 2
Genetic Interactions
- Dosage Growth Defect: 1
- Dosage Lethality: 4
- Negative Genetic: 40
- Phenotypic Suppression: 1
- Positive Genetic: 8
- Synthetic Growth Defect: 1
Regulation
The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.
- Summary
- RGM1 encodes a putative transcription factor that contains two C2H2 zinc fingers. Its targets have not been characterized in small-scale studies. Overproduction of Rgm1p inhibits growth and stimulates expression of genes involved in aldehyde metabolism and monosaccharide catabolism. Rgm1p has been observed to bind to subtelomeric elements, and under hypoxic conditions, it relocalizes quickly from the nucleus to the cytoplasm. RGM1 has a paralog, USV1, that encodes a transcription factor involved in respiratory metabolism and the stress response.
Expression
Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.
Literature
All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.