VAM3 / YOR106W Homology
- Standard Name
- VAM3 1
- Systematic Name
- YOR106W
- SGD ID
- SGD:S000005632
- Aliases
- PTH1
- Feature Type
- ORF , Verified
- Description
- Vacuolar membrane protein and Qa class t-SNARE; syntaxin-like vacuolar t-SNARE that functions with Vam7p in vacuolar protein trafficking; mediates docking/fusion of late transport intermediates with the vacuole; has an acidic di-leucine sorting signal and C-terminal transmembrane region 1 2 3 4 5 6
- Name Description
- VAcuolar Morphogenesis 1
- Comparative Info
-
Homologs
Homology calls are sourced from the Alliance of Genome Resources. Many aspects of data integration presented at the Alliance require a common set of orthology relationships among genes for the organisms represented, including human. The Alliance provides the results of all methods that have been benchmarked by the Quest for Orthologs Consortium (QfO). The homolog inferences from the different methods have been integrated using the DRSC Integrative Ortholog Prediction Tool (DIOPT), which integrates a number of existing methods including those used by the Alliance: Ensembl Compara, HGNC, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, Roundup, TreeFam, and ZFIN.
4 entries for 4 homologsIncrease the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through its pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table.
| Species | Gene ID | Gene name | Source |
|---|---|---|---|
| Drosophila melanogaster | FB:FBgn0036341 | Syx13 | Alliance |
| Xenopus tropicalis | Xenbase:XB-GENE-5872660 | tsnare1 | Alliance |
| Xenopus tropicalis | Xenbase:XB-GENE-974475 | stx12 | Alliance |
| Xenopus tropicalis | Xenbase:XB-GENE-1004004 | stx7 | Alliance |
Functional Complementation
Information about cross-species functional complementation between yeast and other species, curated by SGD and the Princeton Protein Orthology Database (P-POD).
0 entries for 0 complementsIncrease the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through its pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table.
Fungal Homologs
Fungal Homology calls are sourced from AllianceMine, which compiles fungal homology calls from FungiDB, CGD, Panther, PomBase, TreeFam, HomoloGene, and SGD.
4 entries for 4 homologsIncrease the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through its pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table.
| Species | Gene ID | Gene name | Description | Source |
|---|---|---|---|---|
| C. albicans WO-1 | CAWG_02744 | Ortholog(s) have role in vacuole inheritance, single-species biofilm formation on inanimate substrate, hyphal growth, vacuolar acidification, protein secretion, fungal-type cell wall biogenesis, pathogenesis, endocytosis | CGD | |
| C. dubliniensis CD36 | CD36_84260 | Ortholog(s) have SNAP receptor activity, protein homodimerization activity | CGD | |
| C. parapsilosis CDC317 | CPAR2_806150 | Ortholog(s) have SNAP receptor activity, protein homodimerization activity | CGD | |
| C. albicans SC5314 | orf19.5875 | VAM3 | Predicted target membrane receptor (t-SNARE) involved in vacuolar transport, endocytosis, and secretion; required for biofilm formation in RPMI-1640 and for virulence; rat catheter biofilm repressed | CGD |
External Identifiers
List of external identifiers for the protein from various database sources.
23 entries for 8 sourcesIncrease the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through its pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table.
| External ID | Source |
|---|---|
| orf19.5875 | CGD |
| 1726 | DIP |
| AAC49737.1 | GenBank/EMBL/DDBJ |
| CAA99304.1 | GenBank/EMBL/DDBJ |
| CAA64026.1 | GenBank/EMBL/DDBJ |
| 6324680 | GenBank/EMBL/DDBJ |
| X94335 | GenBank/EMBL/DDBJ |
| U57827 | GenBank/EMBL/DDBJ |
| Z75014 | GenBank/EMBL/DDBJ |
| 2501103 | GenBank/EMBL/DDBJ |
Resources
Homologs
AGD | AnalogYeast | BLASTP at NCBI | CGD | FungiDB | PhylomeDB | YGOB | YOGY
Protein Databases
AlphaFold Protein Structure | GPMDB | ModelArchive | Pfam domains | SUPERFAMILY | TopologYeast | UniProtKB
Localization
CYCLoPs | dHITS | LoQAtE | YeastGFP | YeastRGB | YPL+
Post-translational Modifications
CoSMoS.c. | PhosphoGRID | PhosphoPep
S288C only
BLASTN | BLASTP | Design Primers | Restriction Fragment Map | Restriction Fragment Sizes | Six-Frame Translation
S288C vs. other species
BLASTN vs. fungi | BLASTP at NCBI | BLASTP vs. fungi