Protein Help

PRO2 / YOR323C Protein

Protein abundance data, domains, shared domains with other proteins, protein sequence retrieval for various strains, sequence-based physico-chemical properties, protein modification sites, and external identifiers for the protein.


Protein Product
glutamate-5-semialdehyde dehydrogenase
Feature Type
ORF , Verified
EC Number
1.2.1.41

AlphaFold Protein Structure

AlphaFold, developed by DeepMind, is an AI program that accurately predicts protein structures from amino acid sequences, enabling visualization of protein conformations. The predicted structures can be accessed through the Protein Data Bank (PDB) and AlphaFold Protein Structure Database.


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Model Confidence

Very high
Confident
Low
Very low

Experimental Data

Contains experimentally-derived protein half-life data obtained using stable isotope labeling by amino acids (SILAC) coupled with mass spectrometry. This section also contains protein abundance data for both untreated and treated cells obtained from over 20 studies. These data have been normalized and converted to a common unit of molecules per cell.


Protein Half Life

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ExperimentResultReference
half-life11.5 hrChristiano R, et al. (2014)

Protein Abundance

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Abundance (molecules/cell)MediaTreatmentTreatment timeFold ChangeVisualizationStrain backgroundOriginal ReferenceReference
6340SDuntreatedconfocal microscopy evidenceS288CBreker M, et al. (2013)Ho B, et al. (2018)
3473SD2 mM 1,4-dithiothreitol2 hr0.55confocal microscopy evidenceS288CBreker M, et al. (2013)Ho B, et al. (2018)
6370SD1 mM hydrogen peroxide1 hrconfocal microscopy evidenceS288CBreker M, et al. (2013)Ho B, et al. (2018)
2237SD minus nitrogencellular response to nitrogen starvation15 hr0.35confocal microscopy evidenceS288CBreker M, et al. (2013)Ho B, et al. (2018)
5095SDuntreatedconfocal microscopy evidenceS288CChong YT, et al. (2015)Ho B, et al. (2018)
Showing 1 to 5 of 29 entries

Domains and Classification - S288C

Collection of computationally identified domains and motifs, as determined by InterProScan analysis; includes protein coordinates for the domain, a domain Description, a Source and corresponding accession ID, and the number of S. cerevisiae genes that share the same domain.


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Gene Protein Coordinates Accession ID Description Source No. of Genes with Domain

Domain Locations

Visual representation of the locations of the domains within the protein, as listed in the Domains and Classification table. Each row displays the domain(s) derived from a different Source, with domains color-coded according to this Source.

Scroll over a domain to view its exact coordinates and its Description.

Shared Domains

This diagram displays domains (colored squares) shared between the given protein (yellow circle) and other proteins (gray circles); the domains are color-coded according to their source, as displayed in the Domain Locations table, above.

Reset

Click on a gene or domain name to go to its specific page within SGD; drag any of the gene or domain objects around within the visualization for easier viewing; click “Reset” to automatically redraw the diagram.

Alleles

Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.


pro2-Δ

View all PRO2 alleles in SGD search

Sequence

Protein sequence for the given gene in S288C and other strains, when available. Use the pull-down menu under "Strain" to select the sequence for a specific strain. The displayed sequence can be downloaded in FASTA format as a .txt file. Amino acids displayed in blue represent modification sites. More detailed evidence for these modification sites is presented in the Post-translational Modifications table, located just below the protein sequence.


1 MSSSQQIAKN ARKAGNILKT ISNEGRSDIL YKIHDALKAN AHAIEEANKI DLAVAKETGL
61 ADSLLKRLDL FKGDKFEVML QGIKDVAELE DPVGKVKMAR ELDDGLTLYQ VTAPVGVLLV
121 IFESRPEVIA NITALSIKSG NAAILKGGKE SVNTFREMAK IVNDTIAQFQ SETGVPVGSV
181 QLIETRQDVS DLLDQDEYID LVVPRGSNAL VRKIKDTTKI PVLGHADGIC SIYLDEDADL
241 IKAKRISLDA KTNYPAGCNA METLLINPKF SKWWEVLENL TLEGGVTIHA TKDLKTAYFD
301 KLNELGKLTE AIQCKTVDAD EEQDFDKEFL SLDLAAKFVT STESAIQHIN THSSRHTDAI
361 VTENKANAEK FMKGVDSSGV YWNASTRFAD GFRYGFGAEV GISTSKIHAR GPVGLDGLVS
421 YQYQIRGDGQ VASDYLGAGG NKAFVHKDLD IKTVTL*

* Blue amino acids indicate modification sites. More information below.

Post-translational Modifications - S288C

Modification sites for the protein in the selected strain, based on the presence of a residue in the specific strain, as inferred from experimental evidence.

19 entries for 16 sites

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SiteModificationModifierReference
S3phosphorylated residueLanz MC, et al. (2021) PMID: 33491328
S4phosphorylated residueLanz MC, et al. (2021) PMID: 33491328
K9succinylated residueWeinert BT, et al. (2013) PMID: 23954790
K9monoacetylated residueHenriksen P, et al. (2012) PMID: 22865919
K9ubiquitinylated lysineRSP5Fang NN, et al. (2014) PMID: 25344756
K32monoacetylated residueHenriksen P, et al. (2012) PMID: 22865919
K49monoacetylated residueHenriksen P, et al. (2012) PMID: 22865919
K66succinylated residueWeinert BT, et al. (2013) PMID: 23954790
K72monoacetylated residueHenriksen P, et al. (2012) PMID: 22865919
S139phosphorylated residueZhou X, et al. (2021) PMID: 33481703
Showing 1 to 10 of 19 entries

Sequence-Based Physico-chemical Properties - S288C

Calculated protein properties, including amino acid composition, length, coding region calculations, and atomic composition.

Amino Acid Composition

Sort table using the arrow to the right of a column header to sort by that column; download all properties as a .txt file using the "Download Properties" button.

Amino AcidFrequencyPercentage
A449.65
C30.66
D378.11
E296.36
F153.29
G347.46
H91.97
I337.24
K398.55
L449.65
M61.32
N204.39
P91.97
Q153.29
R153.29
S296.36
T286.14
V337.24
W30.66
Y112.41

Physical Details

Length (a.a): 456
Molecular Weight (Da): 49728.9
Isoelectric Point (pl): 5.25
Formula: C2203H3532N596O692S9
Aliphatic Index: 93.7
Instability Index: 28.21

Coding Region Translation Calculations

Codon Bias: 0.27
Codon Adaptation Index: 0.25
Frequence of Optimal Codons: 0.59
Hydropathicity of Protein: -0.21
Aromaticity Score: 0.06

Extinction Coefficients at 280nm

ALL Cys residues appear as half cystines: 33015.0
NO Cys residues appear as half cystines: 32890.0

Atomic Composition

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Atom Frequency Percentage

Data not found or not available for  S288C

External Identifiers

List of external identifiers for the protein from various database sources.

31 entries for 11 sources


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External IDSource
orf19.6779CGD
6586DIP
1.2.1.41ExPASy
X90565GenBank/EMBL/DDBJ
52696232GenBank/EMBL/DDBJ
6324899GenBank/EMBL/DDBJ
52696231GenBank/EMBL/DDBJ
1709784GenBank/EMBL/DDBJ
1171206GenBank/EMBL/DDBJ
1420708GenBank/EMBL/DDBJ
Showing 1 to 10 of 31 entries

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