FAS2 / YPL231W Overview
- Standard Name
- FAS2 1
- Systematic Name
- YPL231W
- SGD ID
- SGD:S000006152
- Feature Type
- ORF , Verified
- Description
- Alpha subunit of fatty acid synthetase; complex catalyzes the synthesis of long-chain saturated fatty acids; contains the acyl-carrier protein domain and beta-ketoacyl reductase, beta-ketoacyl synthase and self-pantetheinylation activities 2 3 4
- Name Description
- Fatty Acid Synthetase
- Comparative Info
-
Sequence
The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.
Analyze Sequence
S288C only
BLASTN | BLASTP | Design Primers | Restriction Fragment Map | Restriction Fragment Sizes | Six-Frame Translation
S288C vs. other species
BLASTN vs. fungi | BLASTP at NCBI | BLASTP vs. fungi
S288C vs. other strains
Protein
Basic sequence-derived (length, molecular weight, isoelectric point) and experimentally-determined (median abundance, median absolute deviation) protein information. Click "Protein Details" for further information about the protein such as half-life, abundance, domains, domains shared with other proteins, protein sequence retrieval for various strains, physico-chemical properties, protein modification sites, and external identifiers for the protein.
- Summary
- Fas2p is 1887 amino acids long, longer-lived, high in abundance; contains acyl carrier domain, type 1 helical domain, 4'-phosphopantetheinyl transferase domain, and two beta-ketoacyl synthase domains; acetylated on 43 lysines, succinylated on 17 lysines, sumoylated on K1826, phosphorylated on 93 residues
- Length (a.a.)
- 1887
- Mol. Weight (Da)
- 206899.6
- Isoelectric Point
- 5.11
- Median Abundance (molecules/cell)
- 52956 +/- 28255
- Half-life (hr)
- 11.8
Alleles
Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.
View all FAS2 alleles in SGD search
Gene Ontology
GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.
- Summary
- Subunit of cytoplasmic fatty acid synthase, contributes acyl-carrier, beta-ketoacyl reductase, beta-ketoacyl synthase and self-pantetheinylation activities; involved in long-chain fatty acid biosynthesis
View computational annotations
Molecular Function
- Manually Curated
- enables 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity (IDA)
- enables 3-oxoacyl-[acyl-carrier-protein] synthase activity (IMP)
- contributes to fatty acid synthase activity (IMP)
- enables holo-[acyl-carrier-protein] synthase activity (IMP)
Biological Process
- Manually Curated
- involved in long-chain fatty acid biosynthetic process (IMP)
Cellular Component
- Manually Curated
- located in cytosol (IDA, HDA)
- part of fatty acid synthase complex (IDA)
- located in mitochondrion (HDA)
Complex
Macromolecular complex annotations are imported from the Complex Portal. These annotations have been derived from physical molecular interaction evidence extracted from the literature and cross-referenced in the entry, or by curator inference from information on homologs in closely related species or by inference from scientific background.
Pathways
Phenotype
Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.
- Summary
- Essential gene; null mutant is rescuable by fatty acid supplement; conditional mutations cause increased heat sensitivity; overexpression causes slow growth
Classical Genetics
- null
- overexpression
- conditional
- reduction of function
- gain of function
- unspecified
- null
- repressible
- reduction of function
- conditional
Large-scale Survey
Interaction
Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.
- Summary
- Fas2p interacts physically with proteins involved in translation; FAS2 interacts genetically with genes involved in transcription
466 total interactions for 428 unique genes
Physical Interactions
- Affinity Capture-MS: 105
- Affinity Capture-RNA: 8
- Affinity Capture-Western: 5
- Co-crystal Structure: 2
- Co-localization: 1
- PCA: 2
- Protein-RNA: 1
- Proximity Label-MS: 1
- Reconstituted Complex: 1
Genetic Interactions
- Negative Genetic: 296
- Phenotypic Enhancement: 2
- Positive Genetic: 39
- Synthetic Rescue: 3
Regulation
The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.
- Regulators
- 13
- Targets
- 0
Expression
Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.
Summary Paragraph
A summary of the locus, written by SGD Biocurators following a thorough review of the literature. Links to gene names and curated GO terms are included within the Summary Paragraphs.
Last Updated: 2010-04-24
Literature
All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.