Phenotype Help

APM1 / YPL259C Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided.


Summary
Non-essential gene; null mutant displays defects in vacuolar protein sorting; null mutants are also sensitive to acid pH, Congo Red, quinine, rapamycin; in large-scale studies null mutant shows reduced competitive fitness and sensitivity to multiple drugs

Annotations

A phenotype is defined as an observable (e.g., apoptosis) and a qualifier (e.g., increased). There may be more than one row with the same phenotype if that phenotype was observed in separate studies or in different conditions, strains, alleles, etc.

46 entries for 15 phenotypes


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.

PhenotypeExperiment TypeMutant InformationStrain BackgroundChemicalDetailsReference
acid pH resistance: decreased
systematic mutation setnull
Allele: apm1-Δ
S288C20 mM propionic acidMira NP, et al. (2009) PMID:19220866
chronological lifespan: decreased
systematic mutation setnull
Allele: apm1-Δ
S288CLaschober GT, et al. (2010) PMID:20883526
competitive fitness: decreased
competitive growth

fitness profiling using complete deletion alleles

null
Allele: apm1-Δ
S288CMedia: minimal medium
Details: Relative fitness score: 0.951
Breslow DK, et al. (2008) PMID:18622397
competitive fitness: decreased
systematic mutation setnull
Allele: apm1-Δ
S288C ethanolQian W, et al. (2012) PMID:23103169
competitive fitness: decreased
systematic mutation setnull
Allele: apm1-Δ
S288CMedia: glycerol medium, YPG
Qian W, et al. (2012) PMID:23103169
competitive fitness: increased
systematic mutation setnull
Allele: apm1-Δ
S288CMedia: synthetic complete medium, SC
Qian W, et al. (2012) PMID:23103169
haploinsufficient
heterozygous diploid, competitive growth

genome-wide fitness profiling

null
Allele: apm1-Δ
S288CMedia: turbidostat growth in FPM medium
Details: Relative growth score: -0.0076
Pir P, et al. (2012) PMID:22244311
metal resistance: decreased
systematic mutation setnull
Allele: apm1-Δ
S288C12 mM manganese(2+)Chesi A, et al. (2012) PMID:22457822
metal resistance: decreased
systematic mutation set null
Allele: apm1-Δ
S288C1.35 mM manganese(II) chlorideHernández RB, et al. (2019) PMID:31024033
prion formation: decreased
Reporter: [GAR+] prion
systematic mutation setnull
Allele: apm1-Δ
S288CDetails: reduced [GAR+] induction upon exposure to Staphylococcus hominis
Jarosz DF, et al. (2014) PMID:25171409
Showing 1 to 10 of 46 entries

Shared Phenotypes

This diagram displays phenotype observables (purple squares) that are shared between the given gene (yellow circle) and other genes (gray circles) based on the number of phenotype observables shared (adjustable using the slider at the bottom).


Reset

Click on a gene or phenotype observable name to go to its specific page within SGD; drag any of the gene or observable objects around within the visualization for easier viewing; click “Reset” to automatically redraw the diagram; filter the genes that share observable terms with the given gene by the number of terms they share by clicking anywhere on the slider bar or dragging the tab to the desired filter number.

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Resources


vacuolar transport