Phenotype Help

TOM5 / YPR133W-A Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided.


Summary
TOM5/YPR133W-A is a non-essential gene; null mutants exhibit a range of phenotypic abnormalities including decreased resistance to acid pH, decreased biofilm formation, decreased competitive fitness, decreased desiccation resistance, increased heat sensitivity, decreased resistance to hyperosmotic stress, absent invasive growth, abnormal lipid particle morphology, decreased metal resistance, increased mitotic recombination, decreased oxidative stress resistance, decreased replicative lifespan, and a decreased rate of respiratory growth. The utilization of nitrogen sources is also decreased, and vacuolar morphology is abnormal. Conditional mutants display abnormal mitochondrial morphology. Overexpression of TOM5 results in abnormal cell cycle progression in the G1 phase and decreased vegetative growth.

Annotations

A phenotype is defined as an observable (e.g., apoptosis) and a qualifier (e.g., increased). There may be more than one row with the same phenotype if that phenotype was observed in separate studies or in different conditions, strains, alleles, etc.


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.

Gene Phenotype Experiment Type Mutant Information Strain Background Chemical Details Reference

Shared Phenotypes

This diagram displays phenotype observables (purple squares) that are shared between the given gene (yellow circle) and other genes (gray circles) based on the number of phenotype observables shared (adjustable using the slider at the bottom).


Reset

Click on a gene or phenotype observable name to go to its specific page within SGD; drag any of the gene or observable objects around within the visualization for easier viewing; click “Reset” to automatically redraw the diagram; filter the genes that share observable terms with the given gene by the number of terms they share by clicking anywhere on the slider bar or dragging the tab to the desired filter number.


Resources