SUP61 Literature

Primary Literature 19 references

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Payea MJ, et al. (2020) Mutations in the anticodon stem of tRNA cause accumulation and Met22-dependent decay of pre-tRNA in yeast. RNA 26(1):29-43 PMID:31619505
Zhu Y, et al. (2020) Mistranslating tRNA identifies a deleterious S213P mutation in the Saccharomyces cerevisiaeeco1-1 allele. Biochem Cell Biol 98(5):624-630 PMID:32476470
Manhas S, et al. (2018) The yeast Ty1 retrotransposon requires components of the nuclear pore complex for transcription and genomic integration. Nucleic Acids Res 46(7):3552-3578 PMID:29514267
Belagal P, et al. (2016) Decoding the principles underlying the frequency of association with nucleoli for RNA polymerase III-transcribed genes in budding yeast. Mol Biol Cell 27(20):3164-3177 PMID:27559135
Kumar Y and Bhargava P (2013) A unique nucleosome arrangement, maintained actively by chromatin remodelers facilitates transcription of yeast tRNA genes. BMC Genomics 14:402 PMID:23767421
Zhou Y, et al. (2013) The pre-mRNA retention and splicing complex controls tRNA maturation by promoting TAN1 expression. Nucleic Acids Res 41(11):5669-78 PMID:23605039
Lamichhane TN, et al. (2011) Plasticity and diversity of tRNA anticodon determinants of substrate recognition by eukaryotic A37 isopentenyltransferases. RNA 17(10):1846-57 PMID:21873461
Whipple JM, et al. (2011) The yeast rapid tRNA decay pathway primarily monitors the structural integrity of the acceptor and T-stems of mature tRNA. Genes Dev 25(11):1173-84 PMID:21632824
Wilusz JE, et al. (2011) tRNAs marked with CCACCA are targeted for degradation. Science 334(6057):817-21 PMID:22076379
Chan PP and Lowe TM (2009) GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 37(Database issue):D93-7 PMID:18984615
Kotelawala L, et al. (2008) Identification of yeast tRNA Um(44) 2'-O-methyltransferase (Trm44) and demonstration of a Trm44 role in sustaining levels of specific tRNA(Ser) species. RNA 14(1):158-69 PMID:18025252
Hani J and Feldmann H (1998) tRNA genes and retroelements in the yeast genome. Nucleic Acids Res 26(3):689-96 PMID:9443958
Lowe TM and Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25(5):955-64 PMID:9023104
Percudani R, et al. (1997) Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J Mol Biol 268(2):322-30 PMID:9159473
Benit P, et al. (1992) Sequence of the sup61-RAD18 region on chromosome III of Saccharomyces cerevisiae. Yeast 8(2):147-53 PMID:1561837
Ho CK and Abelson J (1988) Testing for intron function in the essential Saccharomyces cerevisiae tRNA(SerUCG) gene. J Mol Biol 202(3):667-72 PMID:3050130
Etcheverry T, et al. (1982) Recessive lethality of yeast strains carrying the SUP61 suppressor results from loss of a transfer RNA with a unique decoding function. J Mol Biol 158(4):599-618 PMID:6750138
Olson MV, et al. (1981) Only one of two closely related yeast suppressor tRNA genes contains an intervening sequence. Nature 291(5815):464-9 PMID:6262655
Brandriss MC, et al. (1975) Recessive lethal amber suppressors in yeast. Genetics 79(4):551-60 PMID:1093932

Related Literature

Additional Literature 33 references

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Ma CR, et al. (2024) Activity reconstitution of Kre33 and Tan1 reveals a molecular ruler mechanism in eukaryotic tRNA acetylation. Nucleic Acids Res 52(9):5226-5240 PMID:38613394
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Strassler SE, et al. (2023) tRNA m¹G9 modification depends on substrate-specific RNA conformational changes induced by the methyltransferase Trm10. J Biol Chem 299(12):105443 PMID:37949221
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Zhao Y, et al. (2023) Debugging and consolidating multiple synthetic chromosomes reveals combinatorial genetic interactions. Cell 186(24):5220-5236.e16 PMID:37944511
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Bloom-Ackermann Z, et al. (2014) A comprehensive tRNA deletion library unravels the genetic architecture of the tRNA pool. PLoS Genet 10(1):e1004084 PMID:24453985
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Chen M and Gartenberg MR (2014) Coordination of tRNA transcription with export at nuclear pore complexes in budding yeast. Genes Dev 28(9):959-70 PMID:24788517
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Kucera NJ, et al. (2011) An intrinsically disordered C terminus allows the La protein to assist the biogenesis of diverse noncoding RNA precursors. Proc Natl Acad Sci U S A 108(4):1308-13 PMID:21212361
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Nguyen VC, et al. (2010) Replication stress checkpoint signaling controls tRNA gene transcription. Nat Struct Mol Biol 17(8):976-81 PMID:20639887
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Ouameur AA, et al. (2010) Probing tRNA interaction with biogenic polyamines. RNA 16(10):1968-79 PMID:20729276
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Chernyakov I, et al. (2008) Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1. Genes Dev 22(10):1369-80 PMID:18443146
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Copela LA, et al. (2008) Competition between the Rex1 exonuclease and the La protein affects both Trf4p-mediated RNA quality control and pre-tRNA maturation. RNA 14(6):1214-27 PMID:18456844
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Johansson MJ, et al. (2008) Eukaryotic wobble uridine modifications promote a functionally redundant decoding system. Mol Cell Biol 28(10):3301-12 PMID:18332122
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Thompson DM, et al. (2008) tRNA cleavage is a conserved response to oxidative stress in eukaryotes. RNA 14(10):2095-103 PMID:18719243
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Cieśla M, et al. (2007) Maf1 is involved in coupling carbon metabolism to RNA polymerase III transcription. Mol Cell Biol 27(21):7693-702 PMID:17785443
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Jakó E, et al. (2007) In silico detection of tRNA sequence features characteristic to aminoacyl-tRNA synthetase class membership. Nucleic Acids Res 35(16):5593-609 PMID:17704131
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Goodenbour JM and Pan T (2006) Diversity of tRNA genes in eukaryotes. Nucleic Acids Res 34(21):6137-46 PMID:17088292
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Marck C, et al. (2006) The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications. Nucleic Acids Res 34(6):1816-35 PMID:16600899
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Johansson MJ and Byström AS (2004) The Saccharomyces cerevisiae TAN1 gene is required for N4-acetylcytidine formation in tRNA. RNA 10(4):712-9 PMID:15037780
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Giuliodori S, et al. (2003) A composite upstream sequence motif potentiates tRNA gene transcription in yeast. J Mol Biol 333(1):1-20 PMID:14516739
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Gruić-Sovulj I, et al. (1997) Detection of noncovalent tRNA.aminoacyl-tRNA synthetase complexes by matrix-assisted laser desorption/ionization mass spectrometry. J Biol Chem 272(51):32084-91 PMID:9405405
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Ursic D, et al. (1997) The yeast SEN1 gene is required for the processing of diverse RNA classes. Nucleic Acids Res 25(23):4778-85 PMID:9365256
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Soma A, et al. (1996) The anticodon loop is a major identity determinant of Saccharomyces cerevisiae tRNA(Leu). J Mol Biol 263(5):707-14 PMID:8947570
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Tavernarakis N, et al. (1996) Gene overexpression reveals alternative mechanisms that induce GCN4 mRNA translation. Gene 179(2):271-7 PMID:8972911
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Pande S, et al. (1995) Pulling the ribosome out of frame by +1 at a programmed frameshift site by cognate binding of aminoacyl-tRNA. Mol Cell Biol 15(1):298-304 PMID:7799937
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Dock-Bregeon AC, et al. (1990) The contacts of yeast tRNA(Ser) with seryl-tRNA synthetase studied by footprinting experiments. Eur J Biochem 188(2):283-90 PMID:2180700
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Ho CK, et al. (1990) Accumulation of pre-tRNA splicing '2/3' intermediates in a Saccharomyces cerevisiae mutant. EMBO J 9(4):1245-52 PMID:2182322
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Fabre F, et al. (1989) Isolation of the RAD18 gene of Saccharomyces cerevisiae and construction of rad18 deletion mutants. Mol Gen Genet 215(3):425-30 PMID:2540415
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Brandriss MC, et al. (1976) Substitution of serine caused by a recessive lethal suppressor in yeast. J Mol Biol 102(3):467-76 PMID:178877
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Laten HM, et al. (1976) Genetic analysis of a transposable suppressor gene in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 73(12):4623-7 PMID:794881
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Mortimer RK and Hawthorne DC (1973) Genetic Mapping in Saccharomyces IV. Mapping of Temperature-Sensitive Genes and Use of Disomic Strains in Localizing Genes. Genetics 74(1):33-54 PMID:17248609
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Molinaro M, et al. (1968) Effect of chemical modification of dihydrouridine in yeast transfer ribonucleic acid on amino acid acceptor activity and ribosomal binding. J Biol Chem 243(6):1277-82 PMID:5650897
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Lebowitz P, et al. (1967) Purification of serine-specific transfer ribonucleic acid from bakers' yeast. J Biol Chem 242(19):4523-7 PMID:6065092
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Neelon FA, et al. (1967) Oligonucleotides produced by digestion of bakers' yeast serine transfer ribonucleic acid with specific nucleases. J Biol Chem 242(19):4515-22 PMID:6065091
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Connelly CM and Doctor BP (1966) Purification of two yeast serine transfer ribonucleic acids by countercurrent distribution. J Biol Chem 241(3):715-9 PMID:5325265
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Reviews 10 references

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Wang Z, et al. (2023) Investigations of Single-Subunit tRNA Methyltransferases from Yeast. J Fungi (Basel) 9(10) PMID:37888286
Grewal SS (2015) Why should cancer biologists care about tRNAs? tRNA synthesis, mRNA translation and the control of growth. Biochim Biophys Acta 1849(7):898-907 PMID:25497380
Hopper AK, et al. (2010) Cellular dynamics of tRNAs and their genes. FEBS Lett 584(2):310-7 PMID:19931532
Li Y and Zhou H (2009) tRNAs as regulators in gene expression. Sci China C Life Sci 52(3):245-52 PMID:19294349
McFarlane RJ and Whitehall SK (2009) tRNA genes in eukaryotic genome organization and reorganization. Cell Cycle 8(19):3102-6 PMID:19738425
Engelke DR and Hopper AK (2006) Modified view of tRNA: stability amid sequence diversity. Mol Cell 21(2):144-5 PMID:16427003
Hopper AK (2006) Cellular dynamics of small RNAs. Crit Rev Biochem Mol Biol 41(1):3-19 PMID:16455518
Hopper AK and Phizicky EM (2003) tRNA transfers to the limelight. Genes Dev 17(2):162-80 PMID:12533506
Culbertson MR and Winey M (1989) Split tRNA genes and their products: a paradigm for the study of cell function and evolution. Yeast 5(6):405-27 PMID:2694676
Hawthorne DC and Leupold U (1974) Suppressors in yeast. Curr Top Microbiol Immunol 64(0):1-47 PMID:4602646

Phenotype Literature 1 reference

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Etcheverry T, et al. (1982) Recessive lethality of yeast strains carrying the SUP61 suppressor results from loss of a transfer RNA with a unique decoding function. J Mol Biol 158(4):599-618 PMID:6750138

Interaction Literature 6 references

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Scutenaire J, et al. (2023) The S. cerevisiae m6A-reader Pho92 promotes timely meiotic recombination by controlling key methylated transcripts. Nucleic Acids Res 51(2):517-535 PMID:35934316
Xu F, et al. (2018) Identification of factors that promote biogenesis of tRNA_CGA^Ser. RNA Biol 15(10):1286-1294 PMID:30269676
Porter DF, et al. (2015) Target selection by natural and redesigned PUF proteins. Proc Natl Acad Sci U S A 112(52):15868-73 PMID:26668354
Zhou Y, et al. (2013) The pre-mRNA retention and splicing complex controls tRNA maturation by promoting TAN1 expression. Nucleic Acids Res 41(11):5669-78 PMID:23605039
Kucera NJ, et al. (2011) An intrinsically disordered C terminus allows the La protein to assist the biogenesis of diverse noncoding RNA precursors. Proc Natl Acad Sci U S A 108(4):1308-13 PMID:21212361
Johansson MJ, et al. (2008) Eukaryotic wobble uridine modifications promote a functionally redundant decoding system. Mol Cell Biol 28(10):3301-12 PMID:18332122

High-Throughput Literature 2 references

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Bloom-Ackermann Z, et al. (2014) A comprehensive tRNA deletion library unravels the genetic architecture of the tRNA pool. PLoS Genet 10(1):e1004084 PMID:24453985
Ostrow AZ, et al. (2014) Fkh1 and Fkh2 bind multiple chromosomal elements in the S. cerevisiae genome with distinct specificities and cell cycle dynamics. PLoS One 9(2):e87647 PMID:24504085

SUP61 / YNCC0013W Literature

Primary Literature 19 references

Related Literature

Additional Literature 33 references

Reviews 10 references

Gene Ontology Literature 1 reference

Phenotype Literature 1 reference

Interaction Literature 6 references

Regulation Literature 0 references

High-Throughput Literature 2 references

Primary Literature Literature that either focuses on the gene or contains information about function, biological role, cellular location, phenotype, regulation, structure, or disease homologs in other species for the gene or gene product. 19 references

Related Literature Genes that share literature (indicated by the purple circles) with the specified gene (indicated by yellow circle).

Additional Literature Papers that show experimental evidence for the gene or describe homologs in other species, but for which the gene is not the paper’s principal focus. 33 references

Reviews 10 references

Gene Ontology Literature Paper(s) associated with one or more GO (Gene Ontology) terms in SGD for the specified gene. 1 reference

Phenotype Literature Paper(s) associated with one or more pieces of classical phenotype evidence in SGD for the specified gene. 1 reference

Interaction Literature Paper(s) associated with evidence supporting a physical or genetic interaction between the specified gene and another gene in SGD. Currently, all interaction evidence is obtained from BioGRID. 6 references

Regulation Literature Paper(s) associated with one or more pieces of regulation evidence in SGD, as found on the Regulation page. 0 references

High-Throughput Literature Paper(s) associated with one or more pieces of high-throughput evidence in SGD. 2 references

Primary Literature 19 references

Related Literature

Additional Literature 33 references

Gene Ontology Literature 1 reference

Phenotype Literature 1 reference

Interaction Literature 6 references

Regulation Literature 0 references

High-Throughput Literature 2 references