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YERCTy1-2 Literature
All manually curated literature for the specified gene, organized by relevance to the gene and by
association with specific annotations to the gene in SGD. SGD gathers references via a PubMed search for
papers whose titles or abstracts contain “yeast” or “cerevisiae;” these papers are reviewed manually and
linked to relevant genes and literature topics by SGD curators.
- Unique References
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- Aliases
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Ty1
1
Primary Literature
Literature that either focuses on the gene or contains information about function, biological role,
cellular location, phenotype, regulation, structure, or disease homologs in other species for the gene
or gene product.
No primary literature curated.
Download References (.nbib)
- Masumoto H, et al. (2024) The Ty1 retrotransposon harbors a DNA region that performs dual functions as both a gene silencing and chromatin insulator. Sci Rep 14(1):16641 PMID:39025990
- Wang Y, et al. (2024) Natural Transposable Element Insertions Contribute to Host Fitness in Model Yeasts. Genome Biol Evol 16(9) PMID:39228319
- Beckwith SL, et al. (2023) An interchangeable prion-like domain is required for Ty1 retrotransposition. Proc Natl Acad Sci U S A 120(30):e2303358120 PMID:37459521
- Zawadzka M, et al. (2022) Cell Compartment-Specific Folding of Ty1 Long Terminal Repeat Retrotransposon RNA Genome. Viruses 14(9) PMID:36146813
- Patterson MN, et al. (2015) Preferential retrotransposition in aging yeast mother cells is correlated with increased genome instability. DNA Repair (Amst) 34:18-27 PMID:26298836
- Bleykasten-Grosshans C, et al. (2013) Genome-wide analysis of intraspecific transposon diversity in yeast. BMC Genomics 14:399 PMID:23768249
- Dimitrov MD, et al. (2013) New cell-based assay indicates dependence of antioxidant biological activity on the origin of reactive oxygen species. J Agric Food Chem 61(18):4344-51 PMID:23586517
- Huang Q, et al. (2013) Retrotransposon Ty1 RNA contains a 5'-terminal long-range pseudoknot required for efficient reverse transcription. RNA 19(3):320-32 PMID:23329695
- Carr M, et al. (2012) Evolutionary genomics of transposable elements in Saccharomyces cerevisiae. PLoS One 7(11):e50978 PMID:23226439
- Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 PMID:9582191
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Additional Literature
Papers that show experimental evidence for the gene or describe homologs in other species, but
for which the gene is not the paper’s principal focus.
No additional literature curated.
Download References (.nbib)
- Xiao Y, et al. (2024) The Deficiency of Hypusinated eIF5A Decreases the Putrescine/Spermidine Ratio and Inhibits +1 Programmed Ribosomal Frameshifting during the Translation of Ty1 Retrotransposon in Saccharomyces cerevisiae. Int J Mol Sci 25(3) PMID:38339043
- Qi L, et al. (2023) Shuffling the yeast genome using CRISPR/Cas9-generated DSBs that target the transposable Ty1 elements. PLoS Genet 19(1):e1010590 PMID:36701275
- Błaszczyk L, et al. (2017) Structure of Ty1 Internally Initiated RNA Influences Restriction Factor Expression. Viruses 9(4) PMID:28394277
- Cui P, et al. (2016) Relationships Between RNA Polymerase II Activity and Spt Elongation Factors to Spt- Phenotype and Growth in Saccharomyces cerevisiae. G3 (Bethesda) 6(8):2489-504 PMID:27261007
- Tucker JM, et al. (2015) The Ty1 Retrotransposon Restriction Factor p22 Targets Gag. PLoS Genet 11(10):e1005571 PMID:26451601
- Zhang H, et al. (2013) Gene copy-number variation in haploid and diploid strains of the yeast Saccharomyces cerevisiae. Genetics 193(3):785-801 PMID:23307895
- Aulds J, et al. (2012) Global identification of new substrates for the yeast endoribonuclease, RNase mitochondrial RNA processing (MRP). J Biol Chem 287(44):37089-97 PMID:22977255
- Chan JE and Kolodner RD (2012) Rapid analysis of Saccharomyces cerevisiae genome rearrangements by multiplex ligation-dependent probe amplification. PLoS Genet 8(3):e1002539 PMID:22396658
- Mularoni L, et al. (2012) Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots. Genome Res 22(4):693-703 PMID:22219510
- Servant G, et al. (2012) Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress. Nucleic Acids Res 40(12):5271-82 PMID:22379133
- Yarrington RM, et al. (2012) Novel transcript truncating function of Rap1p revealed by synthetic codon-optimized Ty1 retrotransposon. Genetics 190(2):523-35 PMID:22135353
- Bairwa NK, et al. (2011) The intra-S phase checkpoint protein Tof1 collaborates with the helicase Rrm3 and the F-box protein Dia2 to maintain genome stability in Saccharomyces cerevisiae. J Biol Chem 286(4):2445-54 PMID:21087929
- Bleykasten-Grosshans C, et al. (2011) The Ty1 LTR-retrotransposon population in Saccharomyces cerevisiae genome: dynamics and sequence variations during mobility. FEMS Yeast Res 11(4):334-44 PMID:21272231
- Dimitrov M, et al. (2011) The positive response of Ty1 retrotransposition test to carcinogens is due to increased levels of reactive oxygen species generated by the genotoxins. Arch Toxicol 85(1):67-74 PMID:20401468
- Malagon F and Jensen TH (2011) T-body formation precedes virus-like particle maturation in S. cerevisiae. RNA Biol 8(2):184-9 PMID:21358276
- Suzuki K, et al. (2011) Selective autophagy regulates insertional mutagenesis by the Ty1 retrotransposon in Saccharomyces cerevisiae. Dev Cell 21(2):358-65 PMID:21839922
- Hoang ML, et al. (2010) Competitive repair by naturally dispersed repetitive DNA during non-allelic homologous recombination. PLoS Genet 6(12):e1001228 PMID:21151956
- O'Donnell JP, et al. (2010) Regulators of ribonucleotide reductase inhibit Ty1 mobility in saccharomyces cerevisiae. Mob DNA 1(1):23 PMID:21092201
- Stoycheva T, et al. (2010) The role of reactive oxygen species in the induction of Ty1 retrotransposition in Saccharomyces cerevisiae. Yeast 27(5):259-67 PMID:20073031
- Matsuda E and Garfinkel DJ (2009) Posttranslational interference of Ty1 retrotransposition by antisense RNAs. Proc Natl Acad Sci U S A 106(37):15657-62 PMID:19721006
- O'Sullivan JM, et al. (2009) Repeated elements coordinate the spatial organization of the yeast genome. Yeast 26(2):125-38 PMID:19235779
- Scheifele LZ, et al. (2009) Retrotransposon overdose and genome integrity. Proc Natl Acad Sci U S A 106(33):13927-32 PMID:19666515
- Stamenova R, et al. (2009) Rrm3 protects the Saccharomyces cerevisiae genome from instability at nascent sites of retrotransposition. Genetics 182(3):711-23 PMID:19414561
- Jiang YW (2008) An essential role of Tap42-associated PP2A and 2A-like phosphatases in Ty1 transcriptional silencing of S. cerevisiae. Yeast 25(10):755-64 PMID:18949822
- Malagon F and Jensen TH (2008) The T body, a new cytoplasmic RNA granule in Saccharomyces cerevisiae. Mol Cell Biol 28(19):6022-32 PMID:18678648
- Maxwell PH and Curcio MJ (2008) Incorporation of Y'-Ty1 cDNA destabilizes telomeres in Saccharomyces cerevisiae telomerase-negative mutants. Genetics 179(4):2313-7 PMID:18660531
- Nyswaner KM, et al. (2008) Chromatin-associated genes protect the yeast genome from Ty1 insertional mutagenesis. Genetics 178(1):197-214 PMID:18202368
- Servant G, et al. (2008) Remodeling yeast gene transcription by activating the Ty1 long terminal repeat retrotransposon under severe adenine deficiency. Mol Cell Biol 28(17):5543-54 PMID:18591253
- Stamenova R, et al. (2008) Transposition of Saccharomyces cerevisiae Ty1 retrotransposon is activated by improper cryopreservation. Cryobiology 56(3):241-7 PMID:18466893
- Curcio MJ, et al. (2007) S-phase checkpoint pathways stimulate the mobility of the retrovirus-like transposon Ty1. Mol Cell Biol 27(24):8874-85 PMID:17923678
- Maxwell PH and Curcio MJ (2007) Retrosequence formation restructures the yeast genome. Genes Dev 21(24):3308-18 PMID:18079177
- Pratico ED and Silverman SK (2007) Ty1 reverse transcriptase does not read through the proposed 2',5'-branched retrotransposition intermediate in vitro. RNA 13(9):1528-36 PMID:17652136
- Garfinkel DJ, et al. (2006) Retrotransposon suicide: formation of Ty1 circles and autointegration via a central DNA flap. J Virol 80(24):11920-34 PMID:17005648
- Wheelan SJ, et al. (2006) Transposon insertion site profiling chip (TIP-chip). Proc Natl Acad Sci U S A 103(47):17632-7 PMID:17101968
- Wilhelm M and Wilhelm FX (2006) Cooperation between reverse transcriptase and integrase during reverse transcription and formation of the preintegrative complex of Ty1. Eukaryot Cell 5(10):1760-9 PMID:17031000
- Bolton EC, et al. (2005) Identification and characterization of critical cis-acting sequences within the yeast Ty1 retrotransposon. RNA 11(3):308-22 PMID:15661848
- Coombes CE and Boeke JD (2005) An evaluation of detection methods for large lariat RNAs. RNA 11(3):323-31 PMID:15661842
- Garfinkel DJ, et al. (2005) Ty1 copy number dynamics in Saccharomyces. Genetics 169(4):1845-57 PMID:15687270
- Liti G, et al. (2005) Inferences of evolutionary relationships from a population survey of LTR-retrotransposons and telomeric-associated sequences in the Saccharomyces sensu stricto complex. Yeast 22(3):177-92 PMID:15704235
- Wilhelm M and Wilhelm FX (2005) Role of integrase in reverse transcription of the Saccharomyces cerevisiae retrotransposon Ty1. Eukaryot Cell 4(6):1057-65 PMID:15947198
- Bachman N, et al. (2004) Local definition of Ty1 target preference by long terminal repeats and clustered tRNA genes. Genome Res 14(7):1232-47 PMID:15197163
- Blanc VM and Adams J (2004) Ty1 insertions in intergenic regions of the genome of Saccharomyces cerevisiae transcribed by RNA polymerase III have no detectable selective effect. FEMS Yeast Res 4(4-5):487-91 PMID:14734029
- Moore SP, et al. (2004) Analysis of a Ty1-less variant of Saccharomyces paradoxus: the gain and loss of Ty1 elements. Yeast 21(8):649-60 PMID:15197730
- Garfinkel DJ, et al. (2003) Post-transcriptional cosuppression of Ty1 retrotransposition. Genetics 165(1):83-99 PMID:14504219
- Griffith JL, et al. (2003) Functional genomics reveals relationships between the retrovirus-like Ty1 element and its host Saccharomyces cerevisiae. Genetics 164(3):867-79 PMID:12871900
- Heyman T, et al. (2003) The central PPT of the yeast retrotransposon Ty1 is not essential for transposition. J Mol Biol 331(2):315-20 PMID:12888340
- Scholes DT, et al. (2003) Activation of a LTR-retrotransposon by telomere erosion. Proc Natl Acad Sci U S A 100(26):15736-41 PMID:14673098
- Cristofari G, et al. (2002) A 5'-3' long-range interaction in Ty1 RNA controls its reverse transcription and retrotransposition. EMBO J 21(16):4368-79 PMID:12169639
- Jiang YW (2002) Transcriptional cosuppression of yeast Ty1 retrotransposons. Genes Dev 16(4):467-78 PMID:11850409
- Lawler JF, et al. (2002) A nucleocapsid functionality contained within the amino terminus of the Ty1 protease that is distinct and separable from proteolytic activity. J Virol 76(1):346-54 PMID:11739699
- Lawler JF, et al. (2002) Ty1 defect in proteolysis at high temperature. J Virol 76(9):4233-40 PMID:11932388
- Lerat E, et al. (2002) The relative abundance of dinucleotides in transposable elements in five species. Mol Biol Evol 19(6):964-7 PMID:12032253
- Neuvéglise C, et al. (2002) Genomic evolution of the long terminal repeat retrotransposons in hemiascomycetous yeasts. Genome Res 12(6):930-43 PMID:12045146
- Lawler JF, et al. (2001) Frameshift signal transplantation and the unambiguous analysis of mutations in the yeast retrotransposon Ty1 Gag-Pol overlap region. J Virol 75(15):6769-75 PMID:11435555
- Merkulov GV, et al. (2001) Ty1 proteolytic cleavage sites are required for transposition: all sites are not created equal. J Virol 75(2):638-44 PMID:11134277
- Uzun O and Gabriel A (2001) A Ty1 reverse transcriptase active-site aspartate mutation blocks transposition but not polymerization. J Virol 75(14):6337-47 PMID:11413300
- Feng YX, et al. (2000) The genomic RNA in Ty1 virus-like particles is dimeric. J Virol 74(22):10819-21 PMID:11044130
- Rattray AJ, et al. (2000) The Saccharomyces cerevisiae DNA recombination and repair functions of the RAD52 epistasis group inhibit Ty1 transposition. Genetics 154(2):543-56 PMID:10655210
- AL-Khayat HA, et al. (1999) Yeast Ty retrotransposons assemble into virus-like particles whose T-numbers depend on the C-terminal length of the capsid protein. J Mol Biol 292(1):65-73 PMID:10493857
- Jordan IK and McDonald JF (1999) Tempo and mode of Ty element evolution in Saccharomyces cerevisiae. Genetics 151(4):1341-51 PMID:10101161
- Wilhelm M, et al. (1999) Reverse transcription of the yeast Ty1 retrotransposon: the mode of first strand transfer is either intermolecular or intramolecular. J Mol Biol 288(4):505-10 PMID:10329158
- Wilhelm M, et al. (1999) A sequence immediately upstream of the plus-strand primer is essential for plus-strand DNA synthesis of the Saccharomyces cerevisiae Ty1 retrotransposon. Nucleic Acids Res 27(23):4547-52 PMID:10556309
- Friant S, et al. (1998) Interactions between Ty1 retrotransposon RNA and the T and D regions of the tRNA(iMet) primer are required for initiation of reverse transcription in vivo. Mol Cell Biol 18(2):799-806 PMID:9447976
- Mules EH, et al. (1998) Replication errors during in vivo Ty1 transposition are linked to heterogeneous RNase H cleavage sites. Mol Cell Biol 18(2):1094-104 PMID:9448007
- Tumer NE, et al. (1998) The pokeweed antiviral protein specifically inhibits Ty1-directed +1 ribosomal frameshifting and retrotransposition in Saccharomyces cerevisiae. J Virol 72(2):1036-42 PMID:9444997
- Friant S, et al. (1996) Extended interactions between the primer tRNAi(Met) and genomic RNA of the yeast Ty1 retrotransposon. Nucleic Acids Res 24(3):441-9 PMID:8602356
- Lauermann V, et al. (1995) Plus-strand strong-stop DNA synthesis in retrotransposon Ty1. J Virol 69(12):7845-50 PMID:7494296
- Parket A, et al. (1995) Recombination of Ty elements in yeast can be induced by a double-strand break. Genetics 140(1):67-77 PMID:7635309
- Wilhelm M, et al. (1994) Yeast Ty1 retrotransposon: the minus-strand primer binding site and a cis-acting domain of the Ty1 RNA are both important for packaging of primer tRNA inside virus-like particles. Nucleic Acids Res 22(22):4560-5 PMID:7527135
- Naumov GI, et al. (1992) Genetic homology between Saccharomyces cerevisiae and its sibling species S. paradoxus and S. bayanus: electrophoretic karyotypes. Yeast 8(8):599-612 PMID:1441740
- Wilke CM and Adams J (1992) Fitness effects of Ty transposition in Saccharomyces cerevisiae. Genetics 131(1):31-42 PMID:1317316
- Boeke JD, et al. (1991) Doubling Ty1 element copy number in Saccharomyces cerevisiae: host genome stability and phenotypic effects. Genetics 129(4):1043-52 PMID:1664403
- Wilke CM, et al. (1989) Analysis of yeast retrotransposon Ty insertions at the CAN1 locus. Genetics 123(4):655-65 PMID:2558956
- Kupiec M and Petes TD (1988) Allelic and ectopic recombination between Ty elements in yeast. Genetics 119(3):549-59 PMID:2841187
- Company M and Errede B (1987) Cell-type-dependent gene activation by yeast transposon Ty1 involves multiple regulatory determinants. Mol Cell Biol 7(9):3205-11 PMID:2823122
- Boeke JD, et al. (1985) Ty elements transpose through an RNA intermediate. Cell 40(3):491-500 PMID:2982495
- Bowen BA, et al. (1984) Expression of Ty-lacZ fusions in Saccharomyces cerevisiae. Nucleic Acids Res 12(3):1627-40 PMID:6322112
Reviews
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Download References (.nbib)
- Hossain MJ, et al. (2024) Species-Specific Transcription Factors Associated with Long Terminal Repeat Promoters of Endogenous Retroviruses: A Comprehensive Review. Biomolecules 14(3) PMID:38540701
- Garfinkel DJ, et al. (2016) A self-encoded capsid derivative restricts Ty1 retrotransposition in Saccharomyces. Curr Genet 62(2):321-9 PMID:26650614
- Pachulska-Wieczorek K, et al. (2016) Determinants of Genomic RNA Encapsidation in the Saccharomyces cerevisiae Long Terminal Repeat Retrotransposons Ty1 and Ty3. Viruses 8(7) PMID:27428991
- Curcio MJ, et al. (2015) The Ty1 LTR-retrotransposon of budding yeast, Saccharomyces cerevisiae. Microbiol Spectr 3(2):1-35 PMID:25893143
- Belfort M, et al. (2011) Telomerase and retrotransposons: reverse transcriptases that shaped genomes. Proc Natl Acad Sci U S A 108(51):20304-10 PMID:22187457
- Bleykasten-Grosshans C and Neuvéglise C (2011) Transposable elements in yeasts. C R Biol 334(8-9):679-86 PMID:21819950
- Maxwell PH and Curcio MJ (2007) Host factors that control long terminal repeat retrotransposons in Saccharomyces cerevisiae: implications for regulation of mammalian retroviruses. Eukaryot Cell 6(7):1069-80 PMID:17496126
- Mieczkowski PA, et al. (2006) Recombination between retrotransposons as a source of chromosome rearrangements in the yeast Saccharomyces cerevisiae. DNA Repair (Amst) 5(9-10):1010-20 PMID:16798113
- Garfinkel DJ (2005) Genome evolution mediated by Ty elements in Saccharomyces. Cytogenet Genome Res 110(1-4):63-9 PMID:16093659
- Lesage P and Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90 PMID:16093660
- Wilhelm FX, et al. (2005) Reverse transcriptase and integrase of the Saccharomyces cerevisiae Ty1 element. Cytogenet Genome Res 110(1-4):269-87 PMID:16093680
- Boeke JD and Devine SE (1998) Yeast retrotransposons: finding a nice quiet neighborhood. Cell 93(7):1087-9 PMID:9657139
- Wickner RB (1989) Yeast virology. FASEB J 3(11):2257-65 PMID:2550303