Reference: Lai JZ, et al. (2011) [Analysis of components difference of yeast strains based on laser tweezers Raman spectroscopy combined with multistatistical analysis]. Guang Pu Xue Yu Guang Pu Fen Xi 31(2):412-7

Reference Help

Abstract


The combination of laser tweezers and con-focusing Raman spectroscopy (LTRS) has made it possible to investigate single cells in aqueous media. In our experiments, a modified method of Percoll density gradient centrifugation was developed for isolating synchronous cells from six yeast strains and Raman spectra of single yeast cells were collected by LTRS as well, in which multiple statistical analysis, principal component analyses (PCA) and discriminant function analysis (DFA) were applied to distinguish synchronous cells between yeast strains statistically. The result showed that Raman spectra scattered from the trapping yeast cells could provide intrinsic molecular information, and there were remarkable difference among those of six yeast strains in Raman spectrogram which correspond to various biomacromolecule, the difference of protein as well as lipid were significantly higher than nucleinic acid between two of yeast strains randomly, and among the six strains, synchronized yeast cells can be discriminated using PCA and DFA based on 14 most contribution bands, 706, 862, 918, 997, 1 073, 1 127, 1 269, 1 291, 1 305, 1 429, 1 465, 1 591, 1 602 and 1 652 cm(-1), 10 bands of which were from protein, 3 bands were from lipoid, and 1 band was from nucleinic acid. To validate their significance, these variables were used to reperform DFA analysis and the replotted PC-DFA was the same as in the previous PC-DFA analysis, and the data would be considered validated. The authors show that the approach of laser tweezers Raman spectroscopy combined with multistatistical analysis has the potential to study difference among yeast strains.

Reference Type
English Abstract | Journal Article | Research Support, Non-U.S. Gov't
Authors
Lai JZ, Liu B, Wang GW, Tao ZH, Huang SS
Primary Lit For
Additional Lit For
Review For

Gene Ontology Annotations


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table.

Gene/Complex Qualifier Gene Ontology Term Aspect Annotation Extension Evidence Method Source Assigned On Reference

Phenotype Annotations


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.

Gene Phenotype Experiment Type Mutant Information Strain Background Chemical Details Reference

Disease Annotations


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table.

Gene Disease Ontology Term Qualifier Evidence Method Source Assigned On Reference

Regulation Annotations


Increase the total number of rows displayed on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; to filter the table by a specific experiment type, type a keyword into the Filter box (for example, “microarray”); download this table as a .txt file using the Download button or click Analyze to further view and analyze the list of target genes using GO Term Finder, GO Slim Mapper, or SPELL.

Regulator Target Direction Regulation Of Happens During Method Evidence

Post-translational Modifications


Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through its pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table.

Site Modification Modifier Reference

Interaction Annotations


Genetic Interactions

Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details about experiment type and any other genes involved in the interaction.

Interactor Interactor Allele Assay Annotation Action Phenotype SGA score P-value Source Reference

Physical Interactions

Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details about experiment type and any other genes involved in the interaction.

Interactor Interactor Assay Annotation Action Modification Source Reference

Functional Complementation Annotations


Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through its pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table.

Gene Species Gene ID Strain background Direction Details Source Reference