Chen B, et al. (2025) Spt6-Spn1 interaction is required for RNA Polymerase II association and precise nucleosome positioning along transcribed genes. J Biol Chem 108436 PMID:40127868
Nguyen MC, et al. (2024) Molecular insight into interactions between the Taf14, Yng1 and Sas3 subunits of the NuA3 complex. Nat Commun 15(1):5335 PMID:38914563
Strahl BD and Briggs SD (2021) The SAGA continues: The rise of cis- and trans-histone crosstalk pathways. Biochim Biophys Acta Gene Regul Mech 1864(2):194600 PMID:32645359
Yoblinski AR, et al. (2021) Catalysis-dependent and redundant roles of Dma1 and Dma2 in maintenance of genome stability in Saccharomyces cerevisiae. J Biol Chem 296:100721 PMID:33933452
Zhang J, et al. (2021) Recognition of acetylated histone by Yaf9 regulates metabolic cycling of transcription initiation and chromatin regulatory factors. Genes Dev 35(23-24):1678-1692 PMID:34819351
DiFiore JV, et al. (2020) Unique and Shared Roles for Histone H3K36 Methylation States in Transcription Regulation Functions. Cell Rep 31(10):107751 PMID:32521276
Lerner AM, et al. (2020) An optogenetic switch for the Set2 methyltransferase provides evidence for transcription-dependent and -independent dynamics of H3K36 methylation. Genome Res 30(11):1605-1617 PMID:33020206
Gowans GJ, et al. (2019) Recognition of Histone Crotonylation by Taf14 Links Metabolic State to Gene Expression. Mol Cell 76(6):909-921.e3 PMID:31676231
Dronamraju R, et al. (2018) Spt6 Association with RNA Polymerase II Directs mRNA Turnover During Transcription. Mol Cell 70(6):1054-1066.e4 PMID:29932900
Klein BJ, et al. (2018) Structural insights into the π-π-π stacking mechanism and DNA-binding activity of the YEATS domain. Nat Commun 9(1):4574 PMID:30385749
Klein BJ, et al. (2018) Yaf9 subunit of the NuA4 and SWR1 complexes targets histone H3K27ac through its YEATS domain. Nucleic Acids Res 46(1):421-430 PMID:29145630
Andrews FH, et al. (2016) The essential role of acetyllysine binding by the YEATS domain in transcriptional regulation. Transcription 7(1):14-20 PMID:26934307
Bedard LG, et al. (2016) Quantitative Analysis of Dynamic Protein Interactions during Transcription Reveals a Role for Casein Kinase II in Polymerase-associated Factor (PAF) Complex Phosphorylation and Regulation of Histone H2B Monoubiquitylation. J Biol Chem 291(26):13410-20 PMID:27143358
Chen H, et al. (2016) Histone H3 and TORC1 prevent organelle dysfunction and cell death by promoting nuclear retention of HMGB proteins. Epigenetics Chromatin 9:34 PMID:27540414
Hacker KE, et al. (2016) Structure/Function Analysis of Recurrent Mutations in SETD2 Protein Reveals a Critical and Conserved Role for a SET Domain Residue in Maintaining Protein Stability and Histone H3 Lys-36 Trimethylation. J Biol Chem 291(40):21283-21295 PMID:27528607
Shanle EK, et al. (2015) Association of Taf14 with acetylated histone H3 directs gene transcription and the DNA damage response. Genes Dev 29(17):1795-800 PMID:26341557
Dronamraju R and Strahl BD (2014) A feed forward circuit comprising Spt6, Ctk1 and PAF regulates Pol II CTD phosphorylation and transcription elongation. Nucleic Acids Res 42(2):870-81 PMID:24163256
Gilbert TM, et al. (2014) A PWWP domain-containing protein targets the NuA3 acetyltransferase complex via histone H3 lysine 36 trimethylation to coordinate transcriptional elongation at coding regions. Mol Cell Proteomics 13(11):2883-95 PMID:25104842
Kinkelin K, et al. (2013) Structures of RNA polymerase II complexes with Bye1, a chromatin-binding PHF3/DIDO homologue. Proc Natl Acad Sci U S A 110(38):15277-82 PMID:24003114
McDaniel SL and Strahl BD (2013) Stress-free with Rpd3: a unique chromatin complex mediates the response to oxidative stress. Mol Cell Biol 33(19):3726-7 PMID:23938299
Fuchs SM, et al. (2012) RNA polymerase II carboxyl-terminal domain phosphorylation regulates protein stability of the Set2 methyltransferase and histone H3 di- and trimethylation at lysine 36. J Biol Chem 287(5):3249-56 PMID:22157004
Rizzardi LF, et al. (2012) DNA replication origin function is promoted by H3K4 di-methylation in Saccharomyces cerevisiae. Genetics 192(2):371-84 PMID:22851644
Lickwar CR, et al. (2009) The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency. PLoS One 4(3):e4886 PMID:19295910
Nakanishi S, et al. (2009) Histone H2BK123 monoubiquitination is the critical determinant for H3K4 and H3K79 trimethylation by COMPASS and Dot1. J Cell Biol 186(3):371-7 PMID:19667127
Merker JD, et al. (2008) The histone methylase Set2p and the histone deacetylase Rpd3p repress meiotic recombination at the HIS4 meiotic recombination hotspot in Saccharomyces cerevisiae. DNA Repair (Amst) 7(8):1298-308 PMID:18515193
Youdell ML, et al. (2008) Roles for Ctk1 and Spt6 in regulating the different methylation states of histone H3 lysine 36. Mol Cell Biol 28(16):4915-26 PMID:18541663
Laribee RN, et al. (2007) CCR4/NOT complex associates with the proteasome and regulates histone methylation. Proc Natl Acad Sci U S A 104(14):5836-41 PMID:17389396
Morris SA, et al. (2007) Identification of histone H3 lysine 36 acetylation as a highly conserved histone modification. J Biol Chem 282(10):7632-40 PMID:17189264
Wyce A, et al. (2007) H2B ubiquitylation acts as a barrier to Ctk1 nucleosomal recruitment prior to removal by Ubp8 within a SAGA-related complex. Mol Cell 27(2):275-288 PMID:17643376
Xiao T, et al. (2007) The RNA polymerase II kinase Ctk1 regulates positioning of a 5' histone methylation boundary along genes. Mol Cell Biol 27(2):721-31 PMID:17088384
Tripic T, et al. (2006) The Set2 methyltransferase associates with Ssn6 yet Tup1-Ssn6 repression is independent of histone methylation. Biochem Biophys Res Commun 339(3):905-14 PMID:16329992
Vojnic E, et al. (2006) Structure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription. J Biol Chem 281(1):13-5 PMID:16286474
Kizer KO, et al. (2005) A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation. Mol Cell Biol 25(8):3305-16 PMID:15798214
Morris SA, et al. (2005) Histone H3 K36 methylation is associated with transcription elongation in Schizosaccharomyces pombe. Eukaryot Cell 4(8):1446-54 PMID:16087749
Bryk M, et al. (2002) Evidence that Set1, a factor required for methylation of histone H3, regulates rDNA silencing in S. cerevisiae by a Sir2-independent mechanism. Curr Biol 12(2):165-70 PMID:11818070
Briggs SD, et al. (2001) Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae. Genes Dev 15(24):3286-95 PMID:11751634